Cdh22 (cadherin 22) - Rat Genome Database

Name: Cdh22
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cdh22 (cadherin 22) Rattus norvegicus

Analyze

Symbol:

Cdh22

Name:

cadherin 22

RGD ID:

2321

Description:

Predicted to enable cadherin binding activity and calcium ion binding activity. Involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Orthologous to human CDH22 (cadherin 22); INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 2-acetamidofluorene; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cadherin-22; PB-cadherin; pituitary and brain cadherin

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDH22 (cadherin 22)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cdh22 (cadherin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdh22 (cadherin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDH22 (cadherin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDH22 (cadherin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdh22 (cadherin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDH22 (cadherin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDH22 (cadherin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdh22 (cadherin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CDH22 (cadherin 22)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cdh22 (cadherin 22)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cdh22	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	153,845,563 - 153,970,630 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	153,845,787 - 153,970,588 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	157,654,361 - 157,779,291 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	166,153,335 - 166,278,266 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	163,897,109 - 164,019,650 (-)	NCBI	Rnor_WKY
Rnor_6.0	3	161,574,993 - 161,971,102 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	161,575,631 - 161,917,285 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	167,759,873 - 168,153,365 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	156,155,004 - 156,275,540 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	134,126,192 - 134,128,100 (+)	NCBI
Celera	3	152,449,958 - 152,516,313 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colorectal Neoplasms (ISO)

focal epilepsy (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-acetamidofluorene (EXP)

3,4-methylenedioxymethamphetamine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

amosite asbestos (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (EXP)

chlorpyrifos (EXP)

choline (ISO)

crocidolite asbestos (ISO)

dichlorine (EXP)

diuron (EXP)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

fulvestrant (ISO)

genistein (EXP)

L-ascorbic acid (EXP)

L-methionine (ISO)

lipopolysaccharide (ISO)

morphine (ISO)

N-methyl-N-nitrosourea (EXP)

ozone (EXP)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (EXP)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Soman (EXP)

testosterone (ISO)

trichloroethene (EXP)

triptonide (ISO)

troglitazone (ISO)

tunicamycin (ISO)

undecane (EXP)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adherens junction organization (IBA)

calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (IBA,IDA)

cell morphogenesis (IBA)

cell-cell adhesion mediated by cadherin (IBA)

cell-cell junction assembly (IBA)

homophilic cell adhesion via plasma membrane adhesion molecules (IEA)

Cellular Component

adherens junction (IBA)

catenin complex (IBA)

Molecular Function

cadherin binding (IBA)

calcium ion binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Molecular cloning and characterization of a newly identified member of the cadherin family, PB-cadherin.	Sugimoto K, etal., J Biol Chem 1996 May 10;271(19):11548-56.
7.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:16038895	PMID:17187413

Genomics

Comparative Map Data

Cdh22
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	153,845,563 - 153,970,630 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	153,845,787 - 153,970,588 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	157,654,361 - 157,779,291 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	166,153,335 - 166,278,266 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	163,897,109 - 164,019,650 (-)	NCBI	Rnor_WKY
Rnor_6.0	3	161,574,993 - 161,971,102 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	161,575,631 - 161,917,285 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	167,759,873 - 168,153,365 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	156,155,004 - 156,275,540 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	134,126,192 - 134,128,100 (+)	NCBI
Celera	3	152,449,958 - 152,516,313 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

CDH22
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	46,173,739 - 46,308,498 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	20	46,173,739 - 46,308,498 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	44,802,378 - 44,937,137 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	44,235,783 - 44,313,741 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	44,235,782 - 44,313,741	NCBI
Celera	20	41,513,832 - 41,591,744 (-)	NCBI		Celera
Cytogenetic Map	20	q13.12	NCBI
HuRef	20	41,543,684 - 41,678,251 (-)	NCBI		HuRef
CHM1_1	20	44,704,993 - 44,839,771 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	47,909,792 - 48,044,527 (-)	NCBI		T2T-CHM13v2.0

Cdh22
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	164,953,421 - 165,076,892 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	164,953,427 - 165,076,773 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	165,111,501 - 165,234,924 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	165,111,507 - 165,234,853 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	164,937,007 - 165,060,237 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	164,802,714 - 164,925,924 (-)	NCBI		MGSCv36	mm8
Celera	2	171,049,727 - 171,171,625 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI

Cdh22
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	11,084,448 - 11,151,871 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	11,084,448 - 11,151,871 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDH22
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	20	51,906,860 - 52,041,601 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	42,511,264 - 42,645,662 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	43,596,777 - 43,674,105 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	43,597,548 - 43,674,070 (-)	Ensembl	panpan1.1		panPan2

CDH22
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	33,424,567 - 33,492,162 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	33,425,303 - 33,492,292 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	32,950,778 - 33,018,325 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	34,134,235 - 34,201,817 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	34,134,218 - 34,202,243 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	33,393,032 - 33,459,862 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	33,508,812 - 33,575,667 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	34,047,822 - 34,114,743 (-)	NCBI		UU_Cfam_GSD_1.0

Cdh22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	191,388,473 - 191,450,180 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	6,841,462 - 6,932,547 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936514	6,841,462 - 6,932,547 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDH22
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	48,339,694 - 48,413,799 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	48,339,683 - 48,471,705 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	53,984,767 - 54,059,180 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDH22
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	17,573,244 - 17,709,470 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	17,631,664 - 17,708,309 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	66,209,735 - 66,344,425 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdh22
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	8,369,964 - 8,438,683 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624790	8,369,972 - 8,437,595 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cdh22
542 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	158
Count of miRNA genes:	109
Interacting mature miRNAs:	115
Transcripts:	ENSRNOT00000025150
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141339013	162184794	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141339236	155617360	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	145526770	169034231	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	145925360	166177555	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	145925360	166177555	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	145925360	166177555	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	145925360	166177555	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	145925360	166177555	Rat
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	145925360	166177555	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145925360	166177555	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145956084	157309487	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	145956084	161299569	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	145956084	169034231	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	149040888	168026850	Rat

Markers in Region

D3Got145

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	154,014,561 - 154,014,798 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	161,803,373 - 161,803,609	NCBI	Rnor6.0
Rnor_5.0	3	167,988,278 - 167,988,514	UniSTS	Rnor5.0
RGSC_v3.4	3	156,319,513 - 156,319,748	RGD	RGSC3.4
RGSC_v3.4	3	156,319,512 - 156,319,748	UniSTS	RGSC3.4
RGSC_v3.1	3	156,225,549 - 156,225,784	RGD
Celera	3	152,613,763 - 152,613,999	UniSTS
RH 3.4 Map	3	1459.2	UniSTS
RH 3.4 Map	3	1459.2	RGD
RH 2.0 Map	3	991.0	RGD
Cytogenetic Map	3	q42	UniSTS

D3Got152

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	154,070,095 - 154,070,327 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	162,012,527 - 162,012,758	NCBI	Rnor6.0
Rnor_6.0	3	161,858,907 - 161,859,138	NCBI	Rnor6.0
Rnor_5.0	3	168,194,776 - 168,195,007	UniSTS	Rnor5.0
Rnor_5.0	3	168,043,812 - 168,044,043	UniSTS	Rnor5.0
RGSC_v3.4	3	156,375,045 - 156,375,277	RGD	RGSC3.4
RGSC_v3.4	3	156,375,046 - 156,375,277	UniSTS	RGSC3.4
RGSC_v3.1	3	156,281,082 - 156,281,313	RGD
Celera	3	152,669,273 - 152,669,504	UniSTS
RH 3.4 Map	3	1435.0	RGD
RH 3.4 Map	3	1435.0	UniSTS
RH 2.0 Map	3	991.0	RGD
Cytogenetic Map	3	q42	UniSTS

AA963524

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	154,012,433 - 154,012,597 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	161,801,245 - 161,801,408	NCBI	Rnor6.0
Rnor_5.0	3	167,986,150 - 167,986,313	UniSTS	Rnor5.0
RGSC_v3.4	3	156,317,384 - 156,317,547	UniSTS	RGSC3.4
Celera	3	152,611,635 - 152,611,798	UniSTS
RH 3.4 Map	3	1431.1	UniSTS
Cytogenetic Map	3	q42	UniSTS

RH127321

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	154,024,874 - 154,025,054 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	161,813,687 - 161,813,866	NCBI	Rnor6.0
Rnor_5.0	3	167,998,592 - 167,998,771	UniSTS	Rnor5.0
RGSC_v3.4	3	156,329,826 - 156,330,005	UniSTS	RGSC3.4
Celera	3	152,624,077 - 152,624,256	UniSTS
Cytogenetic Map	3	q42	UniSTS

AW524509

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	153,851,121 - 153,851,223 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	161,580,553 - 161,580,654	NCBI	Rnor6.0
Rnor_5.0	3	167,765,433 - 167,765,534	UniSTS	Rnor5.0
RGSC_v3.4	3	156,160,563 - 156,160,664	UniSTS	RGSC3.4
Celera	3	152,455,517 - 152,455,618	UniSTS
RH 3.4 Map	3	1431.0	UniSTS
Cytogenetic Map	3	q42	UniSTS

BF389765

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	154,038,965 - 154,039,148 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	161,981,397 - 161,981,579	NCBI	Rnor6.0
Rnor_6.0	3	161,827,776 - 161,827,958	NCBI	Rnor6.0
Rnor_5.0	3	168,163,646 - 168,163,828	UniSTS	Rnor5.0
Rnor_5.0	3	168,012,681 - 168,012,863	UniSTS	Rnor5.0
RGSC_v3.4	3	156,343,915 - 156,344,097	UniSTS	RGSC3.4
Celera	3	152,638,150 - 152,638,332	UniSTS
RH 3.4 Map	3	1429.7	UniSTS
Cytogenetic Map	3	q42	UniSTS

BE108444

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	153,902,746 - 153,902,911 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	161,905,502 - 161,905,666	NCBI	Rnor6.0
Rnor_5.0	3	168,087,751 - 168,087,915	UniSTS	Rnor5.0
RGSC_v3.4	3	156,208,625 - 156,208,789	UniSTS	RGSC3.4
Celera	3	152,504,214 - 152,504,378	UniSTS
RH 3.4 Map	3	1431.0	UniSTS
Cytogenetic Map	3	q42	UniSTS

AA859271

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	154,024,871 - 154,025,061 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	161,813,684 - 161,813,873	NCBI	Rnor6.0
Rnor_5.0	3	167,998,589 - 167,998,778	UniSTS	Rnor5.0
RGSC_v3.4	3	156,329,823 - 156,330,012	UniSTS	RGSC3.4
Celera	3	152,624,074 - 152,624,263	UniSTS
RH 3.4 Map	3	1431.1	UniSTS
Cytogenetic Map	3	q42	UniSTS

UniSTS:224287

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	153,868,650 - 153,868,814 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	161,869,106 - 161,869,269	NCBI	Rnor6.0
Rnor_6.0	3	161,678,213 - 161,678,376	NCBI	Rnor6.0
Rnor_5.0	3	167,863,118 - 167,863,281	UniSTS	Rnor5.0
Rnor_5.0	3	168,054,011 - 168,054,174	UniSTS	Rnor5.0
RGSC_v3.4	3	156,174,530 - 156,174,693	UniSTS	RGSC3.4
Celera	3	152,470,521 - 152,470,684	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									59
Low	1	19	8	2	12	2			15	21	29	11
Below cutoff	1	22	14	4	7	4	3	4		13	10		3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D83348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000025150 ⟹ ENSRNOP00000025150

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	153,845,787 - 153,970,588 (-)	Ensembl
Rnor_6.0 Ensembl	3	161,575,631 - 161,917,285 (-)	Ensembl

RefSeq Acc Id:

NM_019161 ⟹ NP_062034

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	153,845,563 - 153,970,588 (-)	NCBI
Rnor_6.0	3	161,574,993 - 161,970,872 (-)	NCBI
Rnor_5.0	3	167,759,873 - 168,153,365 (-)	NCBI
RGSC_v3.4	3	156,155,004 - 156,275,540 (-)	RGD
Celera	3	152,449,958 - 152,516,313 (-)	RGD

Sequence:

show sequence

CGAGCGGACGCCGGAGCCGGACCTGGCCCGGATCCTGCCGCTCGCTGGCGTCCCAAGGTGCGGA
CCAGGGTGCAGCCCGGCCGCTCCCCGAGGTTCCCAATGGATCTGGATGACCCCTAATCCCAGAA
AGACTTCAAGATCCTTTTGCTCCCACTGACCACACCATCTGGGTACAGGGACCATGGCACAAGC
CCTACTCAGGAGCAGCTACTGGGCTGCCTAGTGACTGGACCTGGGGCTTCAGCGAGGGGGGCGC
GGGCCAGGACCGGGTGTCCATGCCCGGGTGCGGCCGCGCCCCCTCCCAGTCCAGCCCGGCATCC
CTGAGGCTGAGGTCACCATGTGACGCAGTACCGCTGCGGTGCCTCTGGTCCATGCTCCGGGGCT
TGGCCCGCGCCGCCAAGCATGAGGCCACGGCCAGCAGGGGCGCTCCGGGCCGGGGCTGCGCTGT
CGCCTGTGCTGCTGCTTCTGCTACTGCTACAGCTGCTGGGGCATCTGTGGGCCGCAAGCACACC
TGCCCCATCCTCCTTGTCACCTGGGACTCAGCAGGACAACCAGCTGGGTGCAGGCCGAGTGAAG
CGCGGTTGGGTGTGGAACCAATTCTTCGTGGTGGAGGAGTACACGGGGACAGAACCCCTGTACG
TGGGCAAGATCCACTCGGATTCTGACGAAGGCGACGGGACCATCAAGTACACCATCTCGGGCGA
GGGTGCAGGGACCATCTTCCTGATCGACGAGCTGACAGGTGACATCCACGCCACGGAGCGCCTG
GACCGGGAGCAGAAAACCTTCTACACACTCCGGGCCCAAGCCAGGGATCGAGCCACCAACCGTC
TGCTGGAGCCGGAGTCAGAGTTCATCATCAAAGTGCAGGACATCAACGACAGTGAACCACGCTT
TCTCCACGGCCCCTACATCGGCAGTGTGGCCGAGCTGTCACCTACAGGCACGTCCGTGATGCAG
GTGATGGCCTCTGATGCAGATGACCCCACTTACGGCAGCAGTGCCCGGCTGGTGTACAGCGTCC
TGGACGGCGAGCACCACTTCACAGTGGACCCCAAGACAGGTGTGATCCGGACAGCAGTGCCTGA
CCTCGACCGTGAGAGCCAGGAACGCTACGAGGTGGTAATCCAAGCCACGGACATGGCAGGCCAG
CTGGGCGGCCTCTCAGGCTCCACTACAGTGACCATCGTGGTTACTGATGTCAACGACAACCCAC
CCCGCTTTCCACAAAAGATGTACCAGTTCAGCATACAGGAGTCAGCGCCCATCGGCACAGCCGT
AGGCCGAGTGAAGGCGGAGGACTCAGATGTGGGCGAGAACACAGACATGACTTATCACCTGAGA
GAAGAAAGTGGCAGTGGAGGAGACGCATTCAAGGTCACCACGGACAGCGACACTCAGGAGGCCA
TCATAGTGGTGCAGAAGCACCTGGACTTCGAGTCGCAGCAGGTCCACACAGTGGTACTGGAAGC
CCTCAACAAGTTTGTGGACCCCCGCTTCGCCGACCTGGGCACATTCCGAGACCAGGCAATCGTG
CGCGTGGCCGTGACCGATGTGGATGAGCCCCCCGAGTTCCGGCCACCCTCCGGCCTACTGGAGG
TGCAGGAGGACGCGCAGGTGGGCTCCCTGGTCGGCGTGGTGACGGCGCGGGACCCCGACGCCGC
CAACCGGCCCGTCCGGTACGCCATTGACCGAGACTCGGATTTGGAGCAGATCTTCGACATCGAT
GCGGACACTGGCGCCATCGTGACTGGCAAGGGGCTGGACCGTGAAACCGCCGGCTGGCACAACA
TTACTGTGTTGGCCATGGAAGCAGACAATCATGCTCAGCTGTCTCGGGCATCCCTACGGATCCG
AATCCTGGATGTGAATGACAATCCCCCAGAGCTGGCCACACCCTACGAGGCCGCTGTGTGTGAA
GACGCCAAGCCAGGCCAGCTCATTCAAACCATCAGTGTGGTGGACAGAGACGAACCACAGGGCG
GCCACCGCTTCTATTTCCGCCTGGTACCAGAGGAACCCAGCAACCCTCACTTCTCTCTGCTGGA
CATCGAAGATAACACGGCTGCGGTGCACACCCAGCATGTGGGCTTCAACCGGCAAGAGCAGGAT
GTGTTCCTCCTGCCCATCCTTGTTGTGGACAGCGGGCCACCCACCCTGAGCAGCACAGGCACCC
TCACCATCCGTATCTGCGGCTGTGACAGTTCCGGTACCATCCAGTCCTGCAACACCACTGCCTT
TGTCATGGCTGCCTCCCTCAGCCCGGGAGCACTCATCGCTCTCTTGGTCTGTGTCCTCATCCTG
GTCGTGCTGGCTTTGCTGATTCTCACCCTCAGGCGGCACCACAAGAGCCACCTGAGCTCAGATG
TGGATGAAGACATGCGGGACAACGTGATCAAATACAACGACGAAGGCGGCGGCGAGCAGGACAC
CGAGGCTTATGACATGTCAGCGCTGCGGAGCCTCTACGATTTCGGGGAGCTCAAGGGTGGCGAC
CCAGGCGGGGGCGCGGCCAGTCCCCCGCAGGCTGCTTCCTCCTCTGAGCGCCACTCGCTGCCTC
GGGGGCCGTCGAGCCCCGAGCCGGACTTCTCGGTGTTCAGGGACTTCATCAGCCGCAAGGTGGC
GCTGGCGGACGCGGACCTGTCGGTGCCTCCCTACGACGCCTTCCAGACCTACGCGTTCGAGGGC
GCGGGCTCGCCGGCAGCCTCGCTCAGCTCGCTGCACAGCGGCTCGACCGGCTCGGAGCAGGACT
TCGCCTTTCTTCGCGCCTGGGGCCCGCGCTTCCGACCGCTGGCCGCTCTCTACGCCGGCCACCG
CGGGGACGACGAGGCCCCGGCCTCCTAGCACCAGCCCACCCAGTCCGACGGGAGGGGATCCGCA
GGCCCCCCGCTCCGCGACACGTTTCCAGGGGTGCAGCTTGCGGAGGACTCAGGGGTGCGGGGGT
GACGACCAATGTCAGGAGAAAGGAGGGAAACCCGGCCTGCACGGATCTGGGTTGGACAGGACCG
CGGAGGGGGAACCCGGCTCTGGGAAAGGACAATGAGAGGAGAAAGCAGAGGATGGCGCTGCTGC
GGTGCCCACCCCAAGGCTTTCTGGCATCCAATTAAAGATGAAGGAAGGGCTGTTCATTTACTAA
GCACCTACTGTGTGCTGAGAGCTACCCGGATACCGACTGCATTGTTGGAGAAACTATGAGGTGG
AGTCCTGAAGGTGTCAGATGGGAAAGCCTCCCAGAGAAGTGGTTTGACTTGTGCAGGGACACCC
AGACAGCAAGTGGTGGAGCCTCTGGCACTGGCCGGCTGCCTGGCCTTGAGCACGTCACCTCACT
TCTCTGGGCCTCAGTTTCCTCATCTGTCAAATGAGGTTAATAACACCACCTACCTCGAAGATTT
GAGAGGATAAAAATGGTTCATGTGTCAAGTTGTTGGGCAGTGCCTGGCACAGAGTAGGTGTTTA
ATAAATGCTCGCCTTTGATACTAAAAAA

hide sequence

RefSeq Acc Id:

XM_039104423 ⟹ XP_038960351

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	153,845,563 - 153,950,632 (-)	NCBI

RefSeq Acc Id:

XM_039104424 ⟹ XP_038960352

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	153,845,563 - 153,915,856 (-)	NCBI

RefSeq Acc Id:

XM_039104425 ⟹ XP_038960353

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	153,845,563 - 153,904,411 (-)	NCBI

RefSeq Acc Id:

XM_039104426 ⟹ XP_038960354

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	153,845,563 - 153,880,248 (-)	NCBI

RefSeq Acc Id:

XR_005501800

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	153,858,030 - 153,970,630 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_062034	(Get FASTA)	NCBI Sequence Viewer
	XP_038960351	(Get FASTA)	NCBI Sequence Viewer
	XP_038960352	(Get FASTA)	NCBI Sequence Viewer
	XP_038960353	(Get FASTA)	NCBI Sequence Viewer
	XP_038960354	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA11894	(Get FASTA)	NCBI Sequence Viewer
	EDL96464	(Get FASTA)	NCBI Sequence Viewer
	EDL96465	(Get FASTA)	NCBI Sequence Viewer
	Q63315	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_062034 ⟸ NM_019161
- Peptide Label:	precursor
- UniProtKB:	Q63561 (UniProtKB/Swiss-Prot), Q63315 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRPRPAGALRAGAALSPVLLLLLLLQLLGHLWAASTPAPSSLSPGTQQDNQLGAGRVKRGWVWN QFFVVEEYTGTEPLYVGKIHSDSDEGDGTIKYTISGEGAGTIFLIDELTGDIHATERLDREQKT FYTLRAQARDRATNRLLEPESEFIIKVQDINDSEPRFLHGPYIGSVAELSPTGTSVMQVMASDA DDPTYGSSARLVYSVLDGEHHFTVDPKTGVIRTAVPDLDRESQERYEVVIQATDMAGQLGGLSG STTVTIVVTDVNDNPPRFPQKMYQFSIQESAPIGTAVGRVKAEDSDVGENTDMTYHLREESGSG GDAFKVTTDSDTQEAIIVVQKHLDFESQQVHTVVLEALNKFVDPRFADLGTFRDQAIVRVAVTD VDEPPEFRPPSGLLEVQEDAQVGSLVGVVTARDPDAANRPVRYAIDRDSDLEQIFDIDADTGAI VTGKGLDRETAGWHNITVLAMEADNHAQLSRASLRIRILDVNDNPPELATPYEAAVCEDAKPGQ LIQTISVVDRDEPQGGHRFYFRLVPEEPSNPHFSLLDIEDNTAAVHTQHVGFNRQEQDVFLLPI LVVDSGPPTLSSTGTLTIRICGCDSSGTIQSCNTTAFVMAASLSPGALIALLVCVLILVVLALL ILTLRRHHKSHLSSDVDEDMRDNVIKYNDEGGGEQDTEAYDMSALRSLYDFGELKGGDPGGGAA SPPQAASSSERHSLPRGPSSPEPDFSVFRDFISRKVALADADLSVPPYDAFQTYAFEGAGSPAA SLSSLHSGSTGSEQDFAFLRAWGPRFRPLAALYAGHRGDDEAPAS hide sequence

RefSeq Acc Id:

ENSRNOP00000025150 ⟸ ENSRNOT00000025150

RefSeq Acc Id:	XP_038960351 ⟸ XM_039104423
- Peptide Label:	isoform X1
- UniProtKB:	Q63561 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038960352 ⟸ XM_039104424
- Peptide Label:	isoform X1
- UniProtKB:	Q63561 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038960353 ⟸ XM_039104425
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038960354 ⟸ XM_039104426
- Peptide Label:	isoform X3

Protein Domains

Cadherin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63315-F1-model_v2	AlphaFold	Q63315	1-813	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692676

Promoter ID:

EPDNEW_R3200

Type:

multiple initiation site

Name:

Cdh22_1

Description:

cadherin 22

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	161,917,253 - 161,917,313	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2321	AgrOrtholog
BioCyc Gene	G2FUF-46809	BioCyc
Ensembl Genes	ENSRNOG00000018557	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000025150	ENTREZGENE
	ENSRNOP00000025150.5	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000025150	ENTREZGENE
	ENSRNOT00000025150.7	UniProtKB/Swiss-Prot
Gene3D-CATH	4.10.900.10	UniProtKB/Swiss-Prot
	Cadherins	UniProtKB/Swiss-Prot
InterPro	Cadherin	UniProtKB/Swiss-Prot
	Cadherin-like_dom	UniProtKB/Swiss-Prot
	Cadherin-like_sf	UniProtKB/Swiss-Prot
	Cadherin_CS	UniProtKB/Swiss-Prot
	Cadherin_cytoplasmic-dom	UniProtKB/Swiss-Prot
	Catenin_binding_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:29182	UniProtKB/Swiss-Prot
NCBI Gene	29182	ENTREZGENE
PANTHER	CADHERIN-22	UniProtKB/Swiss-Prot
	PTHR24027	UniProtKB/Swiss-Prot
Pfam	Cadherin	UniProtKB/Swiss-Prot
	Cadherin_C	UniProtKB/Swiss-Prot
PhenoGen	Cdh22	PhenoGen
PRINTS	CADHERIN	UniProtKB/Swiss-Prot
PROSITE	CADHERIN_1	UniProtKB/Swiss-Prot
	CADHERIN_2	UniProtKB/Swiss-Prot
SMART	SM00112	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49313	UniProtKB/Swiss-Prot
TIGR	TC228999
	TC229000
UniProt	CAD22_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q63561	ENTREZGENE
UniProt Secondary	Q63561	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Cdh22	cadherin 22			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed preferentially in pituitary gland and brain	69804

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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