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Gene: Setdb2 (SET domain bifurcated histone lysine methyltransferase 2) Rattus norvegicus
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Symbol: Setdb2
Name: SET domain bifurcated histone lysine methyltransferase 2
Description: Predicted to have histone methyltransferase activity (H3-K9 specific). Predicted to be involved in chromosome segregation; histone H3-K9 methylation; and mitotic cell cycle. Predicted to localize to the cytosol and nucleoplasm. Orthologous to human SETDB2 (SET domain bifurcated histone lysine methyltransferase 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 2-hydroxypropanoic acid (ortholog); 5-aza-2'-deoxycytidine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: histone-lysine N-methyltransferase SETDB2; LOC100361710; LOC305931; PHD finger protein 11; SET domain bifurcated protein 2-Phf11-1 fusion protein-like; SET domain, bifurcated 2
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01538,699,135 - 39,745,035 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1539,712,861 - 39,742,103 (-)Ensembl
Rnor_6.0 Ensembl1539,693,842 - 39,705,208 (-)Ensembl
Rnor_5.01543,514,812 - 43,566,347 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41538,485,801 - 38,537,934 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11538,521,117 - 38,546,769 (-)NCBI
Celera1533,261,262 - 33,313,067 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Setdb2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 2319564
Created: 2010-05-05
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.