C1h9orf40-ps1 (similar to human chromosome 9 open reading frame 40, pseudogene 1) - Rat Genome Database

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Gene: C1h9orf40-ps1 (similar to human chromosome 9 open reading frame 40, pseudogene 1) Rattus norvegicus
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Symbol: C1h9orf40-ps1
Name: similar to human chromosome 9 open reading frame 40, pseudogene 1
RGD ID: 2318601
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: hypothetical LOC100365684; LOC100365684
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr893,381,024 - 3,382,552 (-)NCBIGRCr8
mRatBN7.293,144,306 - 3,145,830 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.09733,538 - 734,395 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.09700,658 - 701,158 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera950,218 - 51,075 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in C1h9orf40-ps1
17 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)927457995857951Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28441 BioCyc
NCBI Gene 100365684 ENTREZGENE
PhenoGen C1h9orf40-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 C1h9orf40-ps1  similar to human chromosome 9 open reading frame 40, pseudogene 1  LOC100365684  hypothetical LOC100365684  Symbol and Name Changed 1299863 APPROVED
2010-05-05 LOC100365684  hypothetical LOC100365684      Symbol and Name status set to provisional 70820 PROVISIONAL