Mir18b (microRNA 18b) - Rat Genome Database
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Gene: Mir18b (microRNA 18b) Mus musculus
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Symbol: Mir18b
Name: microRNA 18b
RGD ID: 2314109
MGI Page MGI
Description: Involved in cellular response to leukemia inhibitory factor and negative regulation of B cell apoptotic process. Orthologous to human MIR18B (microRNA 18b).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-18b; Mirn; Mirn18b; mmu-mir-1; mmu-mir-18b
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X51,831,208 - 51,831,290 (-)NCBIGRCm39mm39
GRCm38X52,742,331 - 52,742,413 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX52,742,331 - 52,742,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X50,095,508 - 50,095,590 (-)NCBIGRCm37mm9NCBIm37
CeleraX40,158,551 - 40,158,633 (-)NCBICelera
Cytogenetic MapXA5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Additional References at PubMed
PMID:16381832   PMID:17604727   PMID:18329372   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21267068  


Genomics

Comparative Map Data
Mir18b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X51,831,208 - 51,831,290 (-)NCBIGRCm39mm39
GRCm38X52,742,331 - 52,742,413 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX52,742,331 - 52,742,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X50,095,508 - 50,095,590 (-)NCBIGRCm37mm9NCBIm37
CeleraX40,158,551 - 40,158,633 (-)NCBICelera
Cytogenetic MapXA5NCBI
MIR18B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX134,170,041 - 134,170,111 (-)EnsemblGRCh38hg38GRCh38
GRCh38X134,170,041 - 134,170,111 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X133,304,071 - 133,304,141 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X133,131,736 - 133,131,806 (-)NCBINCBI36hg18NCBI36
CeleraX133,690,904 - 133,690,974 (-)NCBI
Cytogenetic MapXq26.2NCBI
HuRefX122,702,110 - 122,702,180 (-)NCBIHuRef
CHM1_1X133,215,767 - 133,215,837 (-)NCBICHM1_1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7360056151324042Mouse
13208553Wght11_mweight 11 (mouse)X1200000060000000Mouse
13208557Lgth13_mbody length 13 (mouse)X1200000060000000Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3390000056800000Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3540000057800000Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3600000078000000Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX4006835474068454Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX4006835474068454Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX4083262187216531Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4243170076431843Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4265674676656858Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4698383880983961Mouse
1301212Bw19_mbody weight QTL 19 (mouse)Not determinedX4728804353323450Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined48090244130864007Mouse
1300853Aggr2_maggression 2 (mouse)Not determinedX4998229053170319Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5168349871391145Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Esr1mmu-miR-18b-5pOncomiRDBexternal_infoNANA19684618

Predicted Targets
Summary Value
Count of predictions:26266
Count of gene targets:11823
Count of transcripts:20867
Interacting mature miRNAs:mmu-miR-18b-3p, mmu-miR-18b-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000103923
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX52,742,331 - 52,742,413 (-)Ensembl
RefSeq Acc Id: NR_030548
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X51,831,208 - 51,831,290 (-)NCBI
GRCm38X52,742,331 - 52,742,413 (-)ENTREZGENE
MGSCv37X50,095,508 - 50,095,590 (-)RGD
CeleraX40,158,551 - 40,158,633 (-)RGD
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3718454 AgrOrtholog
Ensembl Genes ENSMUSG00000077111 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000103923 ENTREZGENE
MGD MGI:3718454 ENTREZGENE
miRBase MI0005483 ENTREZGENE
NCBI Gene 100124431 ENTREZGENE
PhenoGen Mir18b PhenoGen
RNAcentral URS000016A58D RNACentral
  URS000016B425 RNACentral
  URS000075E406 RNACentral