Mir544 (microRNA 544) - Rat Genome Database
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Gene: Mir544 (microRNA 544) Mus musculus
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Symbol: Mir544
Name: microRNA 544
RGD ID: 2314093
MGI Page MGI
Description: Orthologous to human MIR544A (microRNA 544a).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: Mirn; Mirn544; mmu-mir-5; mmu-mir-544
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,695,759 - 109,695,836 (+)NCBIGRCm39mm39
GRCm39 Ensembl12109,695,759 - 109,695,836 (+)Ensembl
GRCm3812109,729,325 - 109,729,402 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,729,325 - 109,729,402 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,967,535 - 110,967,612 (+)NCBIGRCm37mm9NCBIm37
Celera12110,926,555 - 110,926,632 (+)NCBICelera
Cytogenetic Map12F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Additional References at PubMed
PMID:16381832   PMID:16954537   PMID:17604727   PMID:20215419   PMID:20413612   PMID:20439489   PMID:21267068   PMID:21822254   PMID:26107383   PMID:26487685   PMID:26822703   PMID:29337408  
PMID:30513512  


Genomics

Comparative Map Data
Mir544
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,695,759 - 109,695,836 (+)NCBIGRCm39mm39
GRCm39 Ensembl12109,695,759 - 109,695,836 (+)Ensembl
GRCm3812109,729,325 - 109,729,402 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,729,325 - 109,729,402 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,967,535 - 110,967,612 (+)NCBIGRCm37mm9NCBIm37
Celera12110,926,555 - 110,926,632 (+)NCBICelera
Cytogenetic Map12F1NCBI
MIR544A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl14101,048,658 - 101,048,748 (+)EnsemblGRCh38hg38GRCh38
GRCh3814101,048,658 - 101,048,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3714101,514,995 - 101,515,085 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614100,584,747 - 100,584,837 (+)NCBINCBI36hg18NCBI36
Celera1481,571,056 - 81,571,146 (+)NCBI
Cytogenetic Map14q32.31NCBI
HuRef1481,698,368 - 81,698,458 (+)NCBIHuRef
CHM1_114101,454,017 - 101,454,107 (+)NCBICHM1_1
Mir544
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26128,743,530 - 128,743,607 (+)NCBI
Rnor_6.0 Ensembl6133,879,169 - 133,879,246 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06133,879,169 - 133,879,246 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06143,041,526 - 143,041,603 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6126,327,909 - 126,327,986 (+)NCBICelera
Cytogenetic Map6q32NCBI
MIR544
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl869,277,656 - 69,277,744 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1869,277,656 - 69,277,744 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277545446111545446Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80909934113419913Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80909934113419913Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80909934113419913Mouse
1357701Lvrq10_mliver weight QTL 10 (mouse)Not determined1280909934113419913Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280909934113419913Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1281022884115022884Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282700137116700137Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283565816117565965Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283565816117565965Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285995320119995424Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286349301114868033Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288086615120129022Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288086615120129022Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288342095120129022Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289697812120129022Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289972772120129022Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290342009120129022Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291256256120129022Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292783591120129022Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292783591120129022Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292969663120129022Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293298027120129022Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294179630120129022Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296896717120129022Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296896717120129022Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102060930120129022Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109217459115921502Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:20877
Count of gene targets:8558
Count of transcripts:13896
Interacting mature miRNAs:mmu-miR-544-3p, mmu-miR-544-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_030610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000103813
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl12109,729,325 - 109,729,402 (+)Ensembl
RefSeq Acc Id: NR_030610
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912109,695,759 - 109,695,836 (+)NCBI
GRCm3812109,729,325 - 109,729,402 (+)ENTREZGENE
MGSCv3712110,967,535 - 110,967,612 (+)RGD
Celera12110,926,555 - 110,926,632 (+)RGD
cM Map12 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3718547 AgrOrtholog
Ensembl Genes ENSMUSG00000077001 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000103813 ENTREZGENE
MGD MGI:3718547 ENTREZGENE
miRBase MI0005555 ENTREZGENE
NCBI Gene 100124450 ENTREZGENE
PhenoGen Mir544 PhenoGen
RNAcentral URS00002C259F RNACentral
  URS000061EC17 RNACentral
  URS000075CB9C RNACentral