Mir598 (microRNA 598) - Rat Genome Database
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Gene: Mir598 (microRNA 598) Mus musculus
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Symbol: Mir598
Name: microRNA 598
RGD ID: 2314091
MGI Page MGI
Description: Orthologous to human MIR598 (microRNA 598).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-598; Mirn; Mirn598; mmu-mir-5; mmu-mir-598
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391463,964,638 - 63,964,716 (+)NCBIGRCm39mm39
GRCm39 Ensembl1463,964,638 - 63,964,716 (+)Ensembl
GRCm381463,727,189 - 63,727,267 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,727,189 - 63,727,267 (+)EnsemblGRCm38mm10GRCm38
MGSCv371464,346,026 - 64,346,104 (+)NCBIGRCm37mm9NCBIm37
Celera1461,503,646 - 61,503,724 (+)NCBICelera
Cytogenetic Map14D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:16954537   PMID:17604727   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21247879   PMID:21267068   PMID:21822254   PMID:31416909  


Genomics

Comparative Map Data
Mir598
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391463,964,638 - 63,964,716 (+)NCBIGRCm39mm39
GRCm39 Ensembl1463,964,638 - 63,964,716 (+)Ensembl
GRCm381463,727,189 - 63,727,267 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,727,189 - 63,727,267 (+)EnsemblGRCm38mm10GRCm38
MGSCv371464,346,026 - 64,346,104 (+)NCBIGRCm37mm9NCBIm37
Celera1461,503,646 - 61,503,724 (+)NCBICelera
Cytogenetic Map14D1NCBI
MIR598
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl811,035,206 - 11,035,302 (-)EnsemblGRCh38hg38GRCh38
GRCh38811,035,206 - 11,035,302 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37810,892,716 - 10,892,812 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36810,930,125 - 10,930,221 (-)NCBINCBI36hg18NCBI36
Celera810,020,573 - 10,020,669 (-)NCBI
Cytogenetic Map8p23.1NCBI
HuRef89,822,679 - 9,822,775 (-)NCBIHuRef
CHM1_1810,957,969 - 10,958,065 (-)NCBICHM1_1
Mir598
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21537,962,692 - 37,962,770 (+)NCBI
Rnor_6.0 Ensembl1547,057,496 - 47,057,575 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01547,057,496 - 47,057,574 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01550,816,188 - 50,816,266 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1537,645,076 - 37,645,154 (+)NCBICelera
Cytogenetic Map15p12NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420837405121032392Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142101238271648361Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142975953763759676Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143009779364097924Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143009779364097924Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143060000087700000Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143532384068548287Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143719272871192863Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4009986274099862Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144272496776725144Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144272496776725144Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144279982176799969Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144282839876828596Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144282839876828596Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144921797683218107Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145204453586044676Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145352385687524089Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145370000087700000Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145584494189845069Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145630930590309501Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1457942183101622037Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146216002096160240Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:6283
Count of gene targets:3624
Count of transcripts:5466
Interacting mature miRNAs:mmu-miR-598-3p, mmu-miR-598-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000102094
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1463,727,189 - 63,727,267 (+)Ensembl
RefSeq Acc Id: NR_030611
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391463,964,638 - 63,964,716 (+)NCBI
GRCm381463,727,189 - 63,727,267 (+)ENTREZGENE
MGSCv371464,346,026 - 64,346,104 (+)RGD
Celera1461,503,646 - 61,503,724 (+)RGD
cM Map14 ENTREZGENE
Sequence:
Promoters
RGD ID:8682712
Promoter ID:EPDNEW_M19386
Type:multiple initiation site
Name:Mir598_1
Description:Mus musculus microRNA 598 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381463,727,238 - 63,727,298EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3718554 AgrOrtholog
Ensembl Genes ENSMUSG00000076049 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102094 ENTREZGENE
MGD MGI:3718554 ENTREZGENE
miRBase MI0005556 ENTREZGENE
NCBI Gene 100124452 ENTREZGENE
PhenoGen Mir598 PhenoGen
RNAcentral URS00000B053C RNACentral
  URS00005C985A RNACentral
  URS000075A301 RNACentral