Mir877 (microRNA 877) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Mir877 (microRNA 877) Mus musculus
Analyze
Symbol: Mir877
Name: microRNA 877
RGD ID: 2314086
MGI Page MGI
Description: Involved in cell aging. Orthologous to human MIR877 (microRNA 877).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-877; Mirn; Mirn877; mmu-mir-8; mmu-mir-877
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,271,622 - 36,271,706 (-)NCBIGRCm39mm39
GRCm381735,960,730 - 35,960,814 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,960,730 - 35,960,814 (-)EnsemblGRCm38mm10GRCm38
MGSCv371736,097,675 - 36,097,759 (-)NCBIGRCm37mm9NCBIm37
Celera1739,474,255 - 39,474,339 (-)NCBICelera
Cytogenetic Map17B1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell aging  (IDA)

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:16954537   PMID:17604727   PMID:17964270   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:25751060  


Genomics

Comparative Map Data
Mir877
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,271,622 - 36,271,706 (-)NCBIGRCm39mm39
GRCm381735,960,730 - 35,960,814 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,960,730 - 35,960,814 (-)EnsemblGRCm38mm10GRCm38
MGSCv371736,097,675 - 36,097,759 (-)NCBIGRCm37mm9NCBIm37
Celera1739,474,255 - 39,474,339 (-)NCBICelera
Cytogenetic Map17B1NCBI
MIR877
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl630,584,332 - 30,584,417 (+)EnsemblGRCh38hg38GRCh38
GRCh38630,584,332 - 30,584,417 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37630,552,109 - 30,552,194 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,660,087 - 30,660,172 (+)NCBINCBI36hg18NCBI36
Celera632,150,226 - 32,150,311 (+)NCBI
Cytogenetic Map6p21.33NCBI
HuRef630,352,183 - 30,352,268 (+)NCBIHuRef
CHM1_1630,554,223 - 30,554,308 (+)NCBICHM1_1
Mir877
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2202,811,476 - 2,811,560 (+)NCBI
Rnor_6.0 Ensembl203,318,872 - 3,318,956 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0203,318,872 - 3,318,956 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0205,416,400 - 5,416,484 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera20237,323 - 237,407 (+)NCBICelera
Cytogenetic Map20p12NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172485760955405969Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172536594043665344Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172574029459740461Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172618203852604676Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172628636340794146Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172657408160574223Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172749681845311728Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172750432261504322Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172765914543574223Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172831148062311728Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined172982162963821740Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3072257564722705Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3076892947728778Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173184267837333884Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173290000053800000Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173495684169858931Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173565926669659396Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:31982
Count of gene targets:12212
Count of transcripts:21322
Interacting mature miRNAs:mmu-miR-877-3p, mmu-miR-877-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000104738
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1735,960,730 - 35,960,814 (-)Ensembl
RefSeq Acc Id: NR_030608
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391736,271,622 - 36,271,706 (-)NCBI
GRCm381735,960,730 - 35,960,814 (-)ENTREZGENE
MGSCv371736,097,675 - 36,097,759 (-)RGD
Celera1739,474,255 - 39,474,339 (-)RGD
cM Map17 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3718567 AgrOrtholog
Ensembl Genes ENSMUSG00000077931 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000104738 ENTREZGENE
MGD MGI:3718567 ENTREZGENE
miRBase MI0005553 ENTREZGENE
NCBI Gene 100124459 ENTREZGENE
PhenoGen Mir877 PhenoGen
RNAcentral URS00005240FD RNACentral
  URS0000584A54 RNACentral
  URS00006751F8 RNACentral