Mir871 (microRNA 871) - Rat Genome Database
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Gene: Mir871 (microRNA 871) Mus musculus
Analyze
Symbol: Mir871
Name: microRNA 871
RGD ID: 2314069
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-871; Mirn; Mirn871; mmu-mir-8; mmu-mir-871
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X65,854,034 - 65,854,110 (-)NCBIGRCm39mm39
GRCm39 EnsemblX65,854,034 - 65,854,110 (-)Ensembl
GRCm38X66,810,428 - 66,810,504 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX66,810,428 - 66,810,504 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X64,063,603 - 64,063,679 (-)NCBIGRCm37mm9NCBIm37
CeleraX54,962,641 - 54,962,717 (+)NCBICelera
Cytogenetic MapXA7.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
streptozocin  (EXP)

References
Additional References at PubMed
PMID:16381832   PMID:17604727   PMID:17989215   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7360056151324042Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3600000078000000Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX4006835474068454Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX4006835474068454Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX4083262187216531Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4243170076431843Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4265674676656858Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4698383880983961Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined48090244130864007Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5168349871391145Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5290000090700000Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X55000000150000000Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5567874589678745Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5872835492728354Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6230000090800000Mouse
12050071Hstx2_mhybrid sterility, X chromosome 2 (mouse)X6488064169581094Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:22456
Count of gene targets:9916
Count of transcripts:16266
Interacting mature miRNAs:mmu-miR-871-3p, mmu-miR-871-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000104751
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX65,854,034 - 65,854,110 (-)Ensembl
RefSeq Acc Id: ENSMUST00000104763
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX66,810,428 - 66,810,504 (-)Ensembl
RefSeq Acc Id: NR_030536
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X65,854,034 - 65,854,110 (-)NCBI
GRCm38X66,810,428 - 66,810,504 (-)ENTREZGENE
MGSCv37X64,063,603 - 64,063,679 (-)RGD
CeleraX54,962,641 - 54,962,717 (+)RGD
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000096628 Ensembl
  ENSMUSG00000119361 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000104751 ENTREZGENE
MGD MGI:3718561 ENTREZGENE
miRBase MI0005471 ENTREZGENE
NCBI Gene 100124478 ENTREZGENE
PhenoGen Mir871 PhenoGen
RNAcentral URS000040C192 RNACentral
  URS00004BF607 RNACentral
  URS000075B62F RNACentral