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Gene-Chemical Interaction Annotations
Click to see Annotation Detail View
References
Genomics
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Predicted Targets
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | adipose tissue | appendage | |
High | |||||||||||||||
Medium | 1 | 7 | 1 | ||||||||||||
Low | 12 | 21 | 20 | 8 | 155 | 7 | 76 | 9 | 45 | 11 | 28 | 36 | 1 | 17 | 35 |
Below cutoff | 12 | 16 | 4 | 2 | 9 | 1 | 76 | 21 | 44 | 7 | 20 | 15 | 2 | 23 | 36 |
Sequence
Nucleotide Sequences
RefSeq Transcripts | NR_031734 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | AL022069 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
RefSeq Acc Id: | ENST00000411026 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_031734 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Clinical Variants
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 6q25.3-27(chr6:160484810-170612011)x1 | copy number loss | See cases [RCV000134021] | Chr6:160484810..170612011 [GRCh38] Chr6:160905842..170921099 [GRCh37] Chr6:160825832..170763024 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q27(chr6:164790270-170612001)x1 | copy number loss | See cases [RCV000135415] | Chr6:164790270..170612001 [GRCh38] Chr6:165203779..170921089 [GRCh37] Chr6:165123769..170763014 [NCBI36] Chr6:6q27 |
pathogenic |
GRCh38/hg38 6q25.2-27(chr6:154539655-170714507)x1 | copy number loss | See cases [RCV000137381] | Chr6:154539655..170714507 [GRCh38] Chr6:154860789..171023595 [GRCh37] Chr6:154902481..170865520 [NCBI36] Chr6:6q25.2-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:159915390-170714507)x1 | copy number loss | See cases [RCV000139636] | Chr6:159915390..170714507 [GRCh38] Chr6:160336422..171023595 [GRCh37] Chr6:160256412..170865520 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q25.2-27(chr6:152793402-170610394)x1 | copy number loss | See cases [RCV000141880] | Chr6:152793402..170610394 [GRCh38] Chr6:153114537..170919482 [GRCh37] Chr6:153156230..170761407 [NCBI36] Chr6:6q25.2-27 |
pathogenic |
GRCh38/hg38 6q25.2-27(chr6:152376338-170612001)x3 | copy number gain | See cases [RCV000142594] | Chr6:152376338..170612001 [GRCh38] Chr6:152697473..170921089 [GRCh37] Chr6:152739166..170763014 [NCBI36] Chr6:6q25.2-27 |
pathogenic |
GRCh38/hg38 6q26-27(chr6:160899898-170610394)x1 | copy number loss | See cases [RCV000143619] | Chr6:160899898..170610394 [GRCh38] Chr6:161320930..170919482 [GRCh37] Chr6:161240920..170761407 [NCBI36] Chr6:6q26-27 |
pathogenic |
GRCh38/hg38 6q24.1-27(chr6:141132990-169339571)x3 | copy number gain | See cases [RCV000050604] | Chr6:141132990..169339571 [GRCh38] Chr6:141454127..169739666 [GRCh37] Chr6:141495820..169481591 [NCBI36] Chr6:6q24.1-27 |
pathogenic |
GRCh38/hg38 6q25.2-27(chr6:154118058-170602152)x1 | copy number loss | See cases [RCV000052207] | Chr6:154118058..170602152 [GRCh38] Chr6:154439193..170911240 [GRCh37] Chr6:154480885..170753165 [NCBI36] Chr6:6q25.2-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:159825913-170612001)x1 | copy number loss | See cases [RCV000052211] | Chr6:159825913..170612001 [GRCh38] Chr6:160246945..170921089 [GRCh37] Chr6:160166935..170763014 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:160328288-170612001)x1 | copy number loss | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052212]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052212]|See cases [RCV000052212] | Chr6:160328288..170612001 [GRCh38] Chr6:160749320..170921089 [GRCh37] Chr6:160669310..170763014 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:160359686-170608818)x1 | copy number loss | See cases [RCV000052213] | Chr6:160359686..170608818 [GRCh38] Chr6:160780718..170917906 [GRCh37] Chr6:160700708..170759831 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:160422761-170612001)x1 | copy number loss | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052214]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052214]|See cases [RCV000052214] | Chr6:160422761..170612001 [GRCh38] Chr6:160843793..170921089 [GRCh37] Chr6:160763783..170763014 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q26-27(chr6:161205328-170581161)x1 | copy number loss | See cases [RCV000052215] | Chr6:161205328..170581161 [GRCh38] Chr6:161626360..170890249 [GRCh37] Chr6:161546350..170732174 [NCBI36] Chr6:6q26-27 |
pathogenic |
GRCh38/hg38 6q26-27(chr6:162042846-170608818)x1 | copy number loss | See cases [RCV000052223] | Chr6:162042846..170608818 [GRCh38] Chr6:162463878..170917906 [GRCh37] Chr6:162383868..170759831 [NCBI36] Chr6:6q26-27 |
pathogenic |
GRCh38/hg38 6q26-27(chr6:162789915-170602152)x1 | copy number loss | See cases [RCV000052224] | Chr6:162789915..170602152 [GRCh38] Chr6:163210947..170911240 [GRCh37] Chr6:163130937..170753165 [NCBI36] Chr6:6q26-27 |
pathogenic |
GRCh38/hg38 6q26-27(chr6:163420224-170608818)x1 | copy number loss | See cases [RCV000052225] | Chr6:163420224..170608818 [GRCh38] Chr6:163841256..170917906 [GRCh37] Chr6:163761246..170759831 [NCBI36] Chr6:6q26-27 |
pathogenic |
GRCh38/hg38 6q27(chr6:165126489-170581161)x1 | copy number loss | See cases [RCV000052226] | Chr6:165126489..170581161 [GRCh38] Chr6:165539978..170890249 [GRCh37] Chr6:165459968..170732174 [NCBI36] Chr6:6q27 |
pathogenic |
GRCh38/hg38 6q27(chr6:166370159-170602152)x1 | copy number loss | See cases [RCV000052227] | Chr6:166370159..170602152 [GRCh38] Chr6:166783647..170911240 [GRCh37] Chr6:166703637..170753165 [NCBI36] Chr6:6q27 |
pathogenic |
GRCh38/hg38 6q25.2-27(chr6:152376338-170583214)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051902]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051902]|See cases [RCV000051902] | Chr6:152376338..170583214 [GRCh38] Chr6:152697473..170892302 [GRCh37] Chr6:152739166..170734227 [NCBI36] Chr6:6q25.2-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:158664768-170612001)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051904]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051904]|See cases [RCV000051904] | Chr6:158664768..170612001 [GRCh38] Chr6:159085800..170921089 [GRCh37] Chr6:159005788..170763014 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
GRCh38/hg38 6q25.3-27(chr6:159454639-170612001)x1 | copy number loss | See cases [RCV000052209] | Chr6:159454639..170612001 [GRCh38] Chr6:159875671..170921089 [GRCh37] Chr6:159795661..170763014 [NCBI36] Chr6:6q25.3-27 |
pathogenic |
Additional Information
External Database Links
Database | Acc Id | Source(s) |
COSMIC | MIR1913 | COSMIC |
Ensembl Genes | ENSG00000222958 | Ensembl, ENTREZGENE |
Ensembl Transcript | ENST00000411026 | ENTREZGENE |
GTEx | ENSG00000222958 | GTEx |
HGNC ID | HGNC:35397 | ENTREZGENE |
Human Proteome Map | MIR1913 | Human Proteome Map |
miRBase | MI0008334 | ENTREZGENE |
NCBI Gene | 100302141 | ENTREZGENE |
PharmGKB | PA164722547 | PharmGKB |
RNAcentral | URS000075C082 | RNACentral |
URS000075C72C | RNACentral |