Gon4l (gon-4 like) - Rat Genome Database

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Gene: Gon4l (gon-4 like) Mus musculus
Analyze
Symbol: Gon4l
Name: gon-4 like (Ensembl:gon-4-like (C.elegans))
RGD ID: 2312710
MGI Page MGI
Description: Enables transcription corepressor activity. Involved in negative regulation of DNA-templated transcription. Acts upstream of or within B cell differentiation. Located in nucleus. Used to study salivary gland cancer. Orthologous to several human genes including GON4L (gon-4 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1500041I23Rik; 2610100B20Rik; 3632445O20Rik; 5430404N14Rik; AA387005; GON-4 homolog; gon-4-like (C.elegans); GON-4-like protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: 5830417I10Rik  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,742,531 - 88,817,406 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,742,535 - 88,817,410 (+)EnsemblGRCm39 Ensembl
GRCm38388,835,207 - 88,910,099 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,835,231 - 88,910,103 (+)EnsemblGRCm38mm10GRCm38
MGSCv37388,639,150 - 88,714,021 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,639,153 - 88,690,874 (+)NCBIMGSCv36mm8
Celera388,888,295 - 88,948,857 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
fibrillar center  (ISO)
Ino80 complex  (ISO)
nuclear body  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,IDA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12693553   PMID:12904583   PMID:14610273   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:20530203   PMID:21454521   PMID:21677750   PMID:21873635   PMID:23608756   PMID:28381640   PMID:32325033   PMID:32848183   PMID:33864850  


Genomics

Comparative Map Data
Gon4l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,742,531 - 88,817,406 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,742,535 - 88,817,410 (+)EnsemblGRCm39 Ensembl
GRCm38388,835,207 - 88,910,099 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,835,231 - 88,910,103 (+)EnsemblGRCm38mm10GRCm38
MGSCv37388,639,150 - 88,714,021 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,639,153 - 88,690,874 (+)NCBIMGSCv36mm8
Celera388,888,295 - 88,948,857 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.0NCBI
GON4L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,745,112 - 155,859,431 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1155,749,659 - 155,859,400 (-)EnsemblGRCh38hg38GRCh38
GRCh371155,719,450 - 155,829,222 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,986,134 - 154,093,596 (-)NCBINCBI36Build 36hg18NCBI36
Celera1128,792,451 - 128,899,881 (-)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,081,187 - 127,188,429 (-)NCBIHuRef
CHM1_11157,115,874 - 157,222,997 (-)NCBICHM1_1
T2T-CHM13v2.01154,888,528 - 154,998,299 (-)NCBIT2T-CHM13v2.0
Gon4l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,531,274 - 176,604,446 (+)NCBIGRCr8
mRatBN7.22174,233,461 - 174,306,636 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,233,461 - 174,306,634 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,379,748 - 181,453,257 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,402,111 - 179,475,616 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,002,155 - 174,075,625 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02188,139,730 - 188,212,902 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,139,730 - 188,215,723 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,538,916 - 207,612,077 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,899,344 - 180,974,537 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2168,178,148 - 168,250,848 (+)NCBICelera
Cytogenetic Map2q34NCBI
Gon4l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555451,990,202 - 2,054,614 (-)NCBIChiLan1.0ChiLan1.0
GON4L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,994,915 - 94,104,837 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,726,339 - 93,836,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,084,009 - 131,193,884 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11134,916,925 - 135,020,042 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,917,791 - 135,020,042 (-)Ensemblpanpan1.1panPan2
LOC490422
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,927,667 - 42,000,649 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,416,945 - 41,492,159 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,794,608 - 41,870,082 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1741,575,130 - 41,650,318 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,628,781 - 41,704,044 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,912,949 - 41,988,261 (+)NCBIUU_Cfam_GSD_1.0
Gon4l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,014,154 - 26,093,904 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365805,044,536 - 5,124,575 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GON4L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1494,161,887 - 94,248,785 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,060,577 - 103,077,789 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GON4L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,021,625 - 8,230,165 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,025,074 - 8,127,097 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660387,327,797 - 7,408,511 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gon4l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248851,179,033 - 1,246,592 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gon4l
1647 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:977
Count of miRNA genes:253
Interacting mature miRNAs:282
Transcripts:ENSMUST00000081695, ENSMUST00000090942, ENSMUST00000107498
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
10043981Cia5a_mcollagen induced arthritis QTL 5a (mouse)Not determined38717045489140094Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse

Markers in Region
UniSTS:234727  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38388,825,572 - 88,825,847UniSTSGRCm38
MGSCv37388,629,494 - 88,629,769UniSTSGRCm37
Cytogenetic Map3F1UniSTS
UniSTS:234732  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38388,909,443 - 88,909,825UniSTSGRCm38
MGSCv37388,713,365 - 88,713,747UniSTSGRCm37
Celera388,948,201 - 88,948,583UniSTS
Cytogenetic Map3F1UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001242372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY040842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000081695   ⟹   ENSMUSP00000080397
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,742,538 - 88,817,406 (+)Ensembl
GRCm38.p6 Ensembl388,837,016 - 88,910,098 (+)Ensembl
RefSeq Acc Id: ENSMUST00000090942   ⟹   ENSMUSP00000088461
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,744,323 - 88,817,405 (+)Ensembl
GRCm38.p6 Ensembl388,837,016 - 88,910,098 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107498   ⟹   ENSMUSP00000103122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,742,538 - 88,817,410 (+)Ensembl
GRCm38.p6 Ensembl388,835,231 - 88,910,103 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,797,742 - 88,807,806 (+)Ensembl
GRCm38.p6 Ensembl388,890,435 - 88,900,499 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212694   ⟹   ENSMUSP00000148624
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,766,303 - 88,794,259 (+)Ensembl
GRCm38.p6 Ensembl388,855,664 - 88,890,893 (+)Ensembl
RefSeq Acc Id: ENSMUST00020183802   ⟹   ENSMUSP00001091664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,742,561 - 88,744,547 (+)Ensembl
RefSeq Acc Id: ENSMUST00020183806   ⟹   ENSMUSP00001091673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,797,136 - 88,802,541 (+)Ensembl
RefSeq Acc Id: ENSMUST00020183807   ⟹   ENSMUSP00001091670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,742,744 - 88,744,736 (+)Ensembl
RefSeq Acc Id: ENSMUST00020183812   ⟹   ENSMUSP00001091669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,742,535 - 88,753,722 (+)Ensembl
RefSeq Acc Id: NM_001242372   ⟹   NP_001229301
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,742,535 - 88,817,406 (+)NCBI
GRCm38388,835,231 - 88,910,099 (+)NCBI
Celera388,888,295 - 88,948,857 (+)ENTREZGENE
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001408383   ⟹   NP_001395312
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,742,535 - 88,817,406 (+)NCBI
RefSeq Acc Id: NM_027389   ⟹   NP_081665
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,742,535 - 88,817,406 (+)NCBI
GRCm38388,835,231 - 88,910,099 (+)NCBI
MGSCv37388,639,150 - 88,714,021 (+)RGD
Celera388,888,295 - 88,948,857 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036163384   ⟹   XP_036019277
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,742,535 - 88,817,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163385   ⟹   XP_036019278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,742,536 - 88,817,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163386   ⟹   XP_036019279
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,742,536 - 88,817,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163387   ⟹   XP_036019280
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,742,535 - 88,817,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163388   ⟹   XP_036019281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,742,536 - 88,817,406 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941411
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,742,531 - 88,812,836 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081665   ⟸   NM_027389
- Peptide Label: isoform 2
- UniProtKB: E9Q507 (UniProtKB/TrEMBL),   Q32NZ8 (UniProtKB/TrEMBL),   F8WGY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001229301   ⟸   NM_001242372
- Peptide Label: isoform 1
- UniProtKB: Q32NZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000088461   ⟸   ENSMUST00000090942
RefSeq Acc Id: ENSMUSP00000103122   ⟸   ENSMUST00000107498
RefSeq Acc Id: ENSMUSP00000080397   ⟸   ENSMUST00000081695
RefSeq Acc Id: ENSMUSP00000148624   ⟸   ENSMUST00000212694
RefSeq Acc Id: XP_036019277   ⟸   XM_036163384
- Peptide Label: isoform X1
- UniProtKB: Q32NZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019280   ⟸   XM_036163387
- Peptide Label: isoform X4
- UniProtKB: Q32NZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019278   ⟸   XM_036163385
- Peptide Label: isoform X2
- UniProtKB: Q9DB00 (UniProtKB/Swiss-Prot),   Q80TB4 (UniProtKB/Swiss-Prot),   E9Q5N3 (UniProtKB/Swiss-Prot),   Q91YI9 (UniProtKB/Swiss-Prot),   Q32NZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019279   ⟸   XM_036163386
- Peptide Label: isoform X3
- UniProtKB: Q32NZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019281   ⟸   XM_036163388
- Peptide Label: isoform X5
- UniProtKB: Q32NZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00001091670   ⟸   ENSMUST00020183807
RefSeq Acc Id: ENSMUSP00001091664   ⟸   ENSMUST00020183802
RefSeq Acc Id: ENSMUSP00001091669   ⟸   ENSMUST00020183812
RefSeq Acc Id: ENSMUSP00001091673   ⟸   ENSMUST00020183806
RefSeq Acc Id: NP_001395312   ⟸   NM_001408383
- Peptide Label: isoform 3
- UniProtKB: Q32NZ8 (UniProtKB/TrEMBL)
Protein Domains
Myb-like   PAH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DB00-F1-model_v2 AlphaFold Q9DB00 1-2260 view protein structure

Promoters
RGD ID:6833373
Promoter ID:MM_KWN:34890
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   ES_Cell
Transcripts:ENSMUST00000107498,   UC008PWY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,639,019 - 88,639,519 (+)MPROMDB
RGD ID:6834105
Promoter ID:MM_KWN:34891
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000081695,   ENSMUST00000090942,   UC008PXA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,640,136 - 88,640,636 (+)MPROMDB
RGD ID:6881264
Promoter ID:EPDNEW_M4042
Type:initiation region
Name:Gon4l_1
Description:Mus musculus gon-4-like , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38388,835,228 - 88,835,288EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917579 AgrOrtholog
Ensembl Genes ENSMUSG00000054199 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000081695 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000081695.15 UniProtKB/Swiss-Prot
  ENSMUST00000107498 ENTREZGENE
  ENSMUST00000107498.9 UniProtKB/TrEMBL
  ENSMUST00000212694.3 UniProtKB/TrEMBL
  ENSMUST00020183802.1 UniProtKB/TrEMBL
  ENSMUST00020183806.1 UniProtKB/TrEMBL
  ENSMUST00020183807.1 UniProtKB/TrEMBL
  ENSMUST00020183812.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1160.11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Gon4l/CASP8AP2_myb-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT/Myb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76022 UniProtKB/TrEMBL
MGD MGI:1917579 ENTREZGENE
NCBI Gene 76022 ENTREZGENE
PANTHER GON-4-LIKE PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  YY1 ASSOCIATED PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Myb_DNA-binding_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gon4l PhenoGen
PROSITE MYB_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47762 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1D5RM47_MOUSE UniProtKB/TrEMBL
  A0A8I4SX68_MOUSE UniProtKB/TrEMBL
  A0A8I4SX99_MOUSE UniProtKB/TrEMBL
  A0A8I4SYD0_MOUSE UniProtKB/TrEMBL
  A0A8I4T097_MOUSE UniProtKB/TrEMBL
  A0PJB4_MOUSE UniProtKB/TrEMBL
  E9Q507 ENTREZGENE, UniProtKB/TrEMBL
  E9Q5N3 ENTREZGENE
  F8WGY9 ENTREZGENE
  GON4L_MOUSE UniProtKB/Swiss-Prot
  Q32NZ8 ENTREZGENE, UniProtKB/TrEMBL
  Q80TB4 ENTREZGENE
  Q91XI0_MOUSE UniProtKB/TrEMBL
  Q91YI9 ENTREZGENE
  Q9DB00 ENTREZGENE
UniProt Secondary E9Q5N3 UniProtKB/Swiss-Prot
  F8WGY9 UniProtKB/TrEMBL
  Q80TB4 UniProtKB/Swiss-Prot
  Q91YI9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-28 Gon4l  gon-4 like  Gon4l  gon-4-like (C.elegans)  Symbol and/or name change 5135510 APPROVED