8430429K09Rik (RIKEN cDNA 8430429K09 gene) - Rat Genome Database

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Gene: 8430429K09Rik (RIKEN cDNA 8430429K09 gene) Mus musculus
Analyze
Symbol: 8430429K09Rik
Name: RIKEN cDNA 8430429K09 gene
RGD ID: 2312584
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,402,437 - 3,429,831 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,402,365 - 3,429,831 (+)EnsemblGRCm39 Ensembl
GRCm38113,452,437 - 3,479,831 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,452,365 - 3,479,831 (+)EnsemblGRCm38mm10GRCm38
MGSCv37113,352,440 - 3,379,834 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,352,475 - 3,379,834 (+)NCBIMGSCv36mm8
Celera113,942,632 - 3,970,168 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693  


Genomics

Variants

.
Variants in 8430429K09Rik
667 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:661
Count of miRNA genes:386
Interacting mature miRNAs:423
Transcripts:ENSMUST00000136038, ENSMUST00000142397, ENSMUST00000144844, ENSMUST00000146456, ENSMUST00000154397
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000136038
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,402,365 - 3,407,099 (+)Ensembl
GRCm38.p6 Ensembl113,452,365 - 3,457,099 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142397
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,402,472 - 3,429,831 (+)Ensembl
GRCm38.p6 Ensembl113,452,472 - 3,479,831 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,402,437 - 3,408,341 (+)Ensembl
GRCm38.p6 Ensembl113,452,437 - 3,456,963 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146456
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,402,462 - 3,408,343 (+)Ensembl
GRCm38.p6 Ensembl113,452,472 - 3,458,338 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154397
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,402,480 - 3,407,016 (+)Ensembl
GRCm38.p6 Ensembl113,452,480 - 3,457,016 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,402,410 - 3,403,297 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243791
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,402,429 - 3,403,985 (+)Ensembl
RefSeq Acc Id: ENSMUST00000247168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,402,483 - 3,408,339 (+)Ensembl
RefSeq Acc Id: ENSMUST00000247596
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,402,506 - 3,408,346 (+)Ensembl
RefSeq Acc Id: NR_028317
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,402,437 - 3,429,831 (+)NCBI
GRCm38113,452,437 - 3,479,831 (+)ENTREZGENE
MGSCv37113,352,440 - 3,379,834 (+)RGD
Celera113,942,632 - 3,970,168 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_045275
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,402,472 - 3,408,342 (+)NCBI
GRCm38113,452,472 - 3,458,342 (+)NCBI
Celera113,942,632 - 3,970,168 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_045276
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,402,483 - 3,408,342 (+)NCBI
GRCm38113,452,483 - 3,458,342 (+)NCBI
Celera113,942,632 - 3,970,168 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAC39772 (Get FASTA)   NCBI Sequence Viewer  
  EDL40421 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:6821753
Promoter ID:MM_KWN:6165
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000064364,   NR_028317,   OTTMUST00000011148,   OTTMUST00000011149,   OTTMUST00000011151,   OTTMUST00000011152,   OTTMUST00000011191,   OTTMUST00000011193
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36113,352,161 - 3,352,661 (-)MPROMDB
RGD ID:15093880
Promoter ID:EPDNEWNC_M1784
Type:single initiation site
Name:8430429K09Rik_1
Description:RIKEN cDNA 8430429K09 gene [Source:MGISymbol;Acc:MGI:1918773]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38113,452,483 - 3,452,543EPDNEWNC
RGD ID:8673728
Promoter ID:EPDNEW_M14895
Type:multiple initiation site
Name:8430429K09Rik_1
Description:Mus musculus RIKEN cDNA 8430429K09 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38113,452,483 - 3,452,543EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000034587 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000142397 ENTREZGENE
  ENSMUST00000144844 ENTREZGENE
  ENSMUST00000146456 ENTREZGENE
MGD MGI:1918773 ENTREZGENE
NCBI Gene 71523 ENTREZGENE
PhenoGen 8430429K09Rik PhenoGen
RNAcentral URS0000759DBC RNACentral
  URS000075AFD5 RNACentral
  URS000075B252 RNACentral
UniProt Q8C347_MOUSE UniProtKB/TrEMBL