Mup-ps16 (major urinary protein, pseudogene 16) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Mup-ps16 (major urinary protein, pseudogene 16) Mus musculus
Analyze
Symbol: Mup-ps16
Name: major urinary protein, pseudogene 16
RGD ID: 2312247
MGI Page MGI
Description: INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; tetrachloromethane
Type: protein-coding (Ensembl: unprocessed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG667278; Gm8552; major urinary protein 4; major urinary protein 5-like
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39461,701,299 - 61,719,467 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl461,715,719 - 61,718,474 (+)EnsemblGRCm39 Ensembl
GRCm38461,783,062 - 61,801,230 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl461,797,482 - 61,800,237 (+)EnsemblGRCm38mm10GRCm38
MGSCv37461,458,555 - 61,462,264 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36461,283,879 - 61,286,598 (+)NCBIMGSCv36mm8
Cytogenetic Map4B3NCBI
cM Map432.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Mup-ps16
218 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:152
Count of miRNA genes:142
Interacting mature miRNAs:152
Transcripts:ENSMUST00000120085
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
12879977Bod2_mbone length and organs 2 (mouse)44628353180283678Mouse
10043880Adip23_madiposity 23 (mouse)Not determined44628353180283678Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
10449022Aanq1_maristolochic acid nephrotoxicity QTL 1 (mouse)44660382680603826Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
11532688Mh_mmodifier of hemostasis (mouse)44830477582304775Mouse
25314308Mlh1fc1_mMLH1 foci count 1 (mouse)44850000076918237Mouse
1301995Lprm1_mlymphoproliferation modifier 1 (mouse)Not determined45010026284100408Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45010026284100408Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588510637Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45447158988471589Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45447158988471589Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
1357443Lhyp_mlung hyperpermeability (mouse)Not determined46045401166764818Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_011250147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_881335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_881336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_881337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_881338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_881339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK041223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK006670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT990634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000120085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl461,715,719 - 61,718,474 (+)Ensembl
GRCm38.p6 Ensembl461,797,482 - 61,800,237 (+)Ensembl
RefSeq Acc Id: XM_011250147   ⟹   XP_011248449
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,299 - 61,719,467 (+)NCBI
GRCm38461,783,062 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250153   ⟹   XP_011248455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,304 - 61,719,467 (+)NCBI
GRCm38461,783,066 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250154   ⟹   XP_011248456
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,304 - 61,719,467 (+)NCBI
GRCm38461,783,066 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250156   ⟹   XP_011248458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,304 - 61,719,467 (+)NCBI
GRCm38461,783,066 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250158   ⟹   XP_011248460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,367 - 61,719,467 (+)NCBI
GRCm38461,783,130 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250160   ⟹   XP_011248462
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,314 - 61,719,467 (+)NCBI
GRCm38461,783,076 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250161   ⟹   XP_011248463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,367 - 61,719,467 (+)NCBI
GRCm38461,783,130 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320500   ⟹   XP_017175989
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,714,651 - 61,719,467 (+)NCBI
GRCm38461,796,414 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784332
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,317 - 61,719,467 (+)NCBI
GRCm38461,783,080 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784333
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,318 - 61,719,467 (+)NCBI
GRCm38461,783,081 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784334
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,323 - 61,719,467 (+)NCBI
GRCm38461,783,086 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784335
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,401 - 61,719,467 (+)NCBI
GRCm38461,783,164 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XR_881335
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,367 - 61,719,467 (+)NCBI
GRCm38461,783,130 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XR_881336
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,401 - 61,719,467 (+)NCBI
GRCm38461,783,164 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XR_881337
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,401 - 61,719,467 (+)NCBI
GRCm38461,783,164 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XR_881338
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,401 - 61,719,467 (+)NCBI
GRCm38461,783,164 - 61,801,230 (+)NCBI
Sequence:
RefSeq Acc Id: XR_881339
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39461,701,397 - 61,719,467 (+)NCBI
GRCm38461,783,160 - 61,801,230 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_011248449   ⟸   XM_011250147
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011248456   ⟸   XM_011250154
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011248455   ⟸   XM_011250153
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011248458   ⟸   XM_011250156
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011248462   ⟸   XM_011250160
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011248460   ⟸   XM_011250158
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011248463   ⟸   XM_011250161
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017175989   ⟸   XM_017320500
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090090 Ensembl
MGD MGI:3645603 ENTREZGENE
NCBI Gene 667278 ENTREZGENE
PhenoGen Mup-ps16 PhenoGen