Gm11952 (predicted gene 11952) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gm11952 (predicted gene 11952) Mus musculus
Analyze
Symbol: Gm11952
Name: predicted gene 11952
RGD ID: 2312228
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Nol8  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,822,970 - 3,824,612 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,822,955 - 3,823,775 (+)EnsemblGRCm39 Ensembl
GRCm38113,872,970 - 3,874,612 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,872,955 - 3,873,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv37113,772,958 - 3,773,823 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,772,958 - 3,773,823 (+)NCBIMGSCv36mm8
Celera114,366,650 - 4,367,515 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm11952
55 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:96
Interacting mature miRNAs:101
Transcripts:ENSMUST00000121172
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_032942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL731853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000121172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,822,955 - 3,823,775 (+)Ensembl
GRCm38.p6 Ensembl113,872,955 - 3,873,775 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084077 Ensembl
MGD MGI:3650309 ENTREZGENE
NCBI Gene 664920 ENTREZGENE
PhenoGen Gm11952 PhenoGen