Gm15778 (predicted gene 15778) - Rat Genome Database

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Gene: Gm15778 (predicted gene 15778) Mus musculus
Analyze
Symbol: Gm15778
Name: predicted gene 15778
RGD ID: 2312156
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG665372
Related Functional Gene: Hmgb1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396148,600,330 - 148,601,261 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6148,600,527 - 148,601,134 (-)EnsemblGRCm39 Ensembl
GRCm386148,698,832 - 148,699,763 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6148,699,029 - 148,699,636 (-)EnsemblGRCm38mm10GRCm38
MGSCv376148,647,554 - 148,648,158 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366148,656,199 - 148,656,806 (-)NCBIMGSCv36mm8
Celera6151,735,050 - 151,735,654 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm15778
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:67
Interacting mature miRNAs:69
Transcripts:ENSMUST00000118469
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128601582149588044Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128601582149588044Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128601582149588044Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129330484149588044Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129330484149588044Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129330484149588044Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129534979149588044Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6129953954149588044Mouse
14746990Manh61_mmandible shape 61 (mouse)6130156355149588044Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130156355149588044Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000118469
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,600,527 - 148,601,134 (-)Ensembl
GRCm38.p6 Ensembl6148,699,029 - 148,699,636 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081556 Ensembl
MGD MGI:3783220 ENTREZGENE
NCBI Gene 665372 ENTREZGENE
PhenoGen Gm15778 PhenoGen