Gm15364 (predicted gene 15364) - Rat Genome Database

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Gene: Gm15364 (predicted gene 15364) Mus musculus
Analyze
Symbol: Gm15364
Name: predicted gene 15364
RGD ID: 2312149
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Chp1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,554,454 - 73,560,693 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,554,552 - 73,555,136 (+)EnsemblGRCm39 Ensembl
GRCm38X74,510,848 - 74,517,087 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,510,946 - 74,511,530 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,756,187 - 71,762,426 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X71,749,565 - 71,756,869 (+)NCBIMGSCv36mm8
CeleraX65,763,722 - 65,770,178 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX38.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm15364
110 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:142
Interacting mature miRNAs:145
Transcripts:ENSMUST00000119618
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse
1357730Hstx1_mhybrid sterility, X chromosome 1 (mouse)Not determinedX7145385277600812Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_013027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL669976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000119618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX73,554,552 - 73,555,136 (+)Ensembl
GRCm38.p6 EnsemblX74,510,946 - 74,511,530 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082447 Ensembl
MGD MGI:3707584 ENTREZGENE
NCBI Gene 674920 ENTREZGENE
PhenoGen Gm15364 PhenoGen