Gm7841 (predicted gene 7841) - Rat Genome Database

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Gene: Gm7841 (predicted gene 7841) Mus musculus
Analyze
Symbol: Gm7841
Name: predicted gene 7841
RGD ID: 2312060
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG665889
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X132,954,364 - 132,955,222 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX132,953,536 - 132,955,164 (-)EnsemblGRCm39 Ensembl
GRCm38X134,053,615 - 134,054,473 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,052,787 - 134,054,415 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X130,588,154 - 130,588,954 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X129,399,965 - 129,400,765 (-)NCBIMGSCv36mm8
CeleraX116,929,996 - 116,930,796 (-)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX55.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm7841
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:28
Interacting mature miRNAs:28
Transcripts:ENSMUST00000122108
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse

Markers in Region
PMC152247P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37X130,588,154 - 130,588,954UniSTSGRCm37
MGSCv37156,603,923 - 6,604,741UniSTSGRCm37
Celera156,502,496 - 6,503,314UniSTS
CeleraX116,929,996 - 116,930,796UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map11DUniSTS
cM Map1155.6UniSTS


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AL671915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000122108
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX132,953,536 - 132,955,164 (-)Ensembl
GRCm38.p6 EnsemblX134,052,787 - 134,054,415 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080788 Ensembl
MGD MGI:3644050 ENTREZGENE
NCBI Gene 665889 ENTREZGENE
PhenoGen Gm7841 PhenoGen