H2af-ps1 (H2A histone family, pseudogene 1) - Rat Genome Database

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Gene: H2af-ps1 (H2A histone family, pseudogene 1) Mus musculus
Analyze
Symbol: H2af-ps1
Name: H2A histone family, pseudogene 1
RGD ID: 2312052
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: Gm15652; H2A histone family, pseudogene; H2af; H2af-ps
Related Functional Gene: H2ac19  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39536,075,241 - 36,075,545 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl536,075,241 - 36,075,535 (+)EnsemblGRCm39 Ensembl
GRCm38535,917,897 - 35,918,201 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,917,897 - 35,918,191 (+)EnsemblGRCm38mm10GRCm38
MGSCv37536,236,536 - 36,260,849 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36536,236,537 - 36,260,850 (+)NCBIMGSCv36mm8
Celera533,367,152 - 33,394,672 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in H2af-ps1
10 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:144
Interacting mature miRNAs:149
Transcripts:ENSMUST00000119066
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_016660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000119066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl536,075,241 - 36,075,535 (+)Ensembl
GRCm38.p6 Ensembl535,917,897 - 35,918,191 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082692 Ensembl, ENTREZGENE
MGD MGI:3783096 ENTREZGENE
NCBI Gene 100040209 ENTREZGENE
PhenoGen H2af-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-04 H2af-ps1  H2A histone family, pseudogene 1  H2af-ps  H2A histone family, pseudogene  Symbol and/or name change 5135510 APPROVED
2013-06-11 H2af-ps  H2A histone family, pseudogene  Gm15652  predicted gene 15652  Symbol and/or name change 5135510 APPROVED