Oat-rs1 (ornithine aminotransferase related sequence 1) - Rat Genome Database

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Gene: Oat-rs1 (ornithine aminotransferase related sequence 1) Mus musculus
Analyze
Symbol: Oat-rs1
Name: ornithine aminotransferase related sequence 1
RGD ID: 2311917
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 635275; EG667523; Gm16453; Gm7154; predicted gene 16453
Related Functional Gene: Oat  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X74,958,704 - 74,960,447 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX74,958,822 - 74,960,132 (+)EnsemblGRCm39 Ensembl
GRCm38X75,915,098 - 75,916,841 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX75,915,216 - 75,916,526 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X73,160,437 - 73,162,180 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X73,130,007 - 73,161,865 (+)NCBIMGSCv36mm8
CeleraX67,318,912 - 67,320,655 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX38.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:1349842   PMID:7821804   PMID:7873878   PMID:10441734  


Genomics

Variants

.
Variants in Oat-rs1
22 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:105
Interacting mature miRNAs:105
Transcripts:ENSMUST00000122186
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1357730Hstx1_mhybrid sterility, X chromosome 1 (mouse)Not determinedX7145385277600812Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000122186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX74,958,822 - 74,960,132 (+)Ensembl
GRCm38.p6 EnsemblX75,915,216 - 75,916,526 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000083544 Ensembl
MGD MGI:97395 ENTREZGENE
NCBI Gene 635275 ENTREZGENE
PhenoGen Oat-rs1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-25 Oat-rs1  ornithine aminotransferase related sequence 1  Gm16453  predicted gene 16453  Data merged from RGD:1618516 737654 PROVISIONAL
2014-09-17 Oat-rs1  ornithine aminotransferase related sequence 1  Gm7154  predicted gene 7154  Symbol and/or name change 5135510 APPROVED