Gm6427 (predicted gene 6427) - Rat Genome Database

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Gene: Gm6427 (predicted gene 6427) Mus musculus
Analyze
Symbol: Gm6427
Name: predicted gene 6427
RGD ID: 2311864
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG623412
Related Functional Gene: Rfc4  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X111,700,800 - 111,701,821 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX111,700,839 - 111,701,817 (+)EnsemblGRCm39 Ensembl
GRCm38X112,791,103 - 112,792,124 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX112,791,142 - 112,792,120 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X109,904,712 - 109,905,733 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X108,908,053 - 108,909,026 (+)NCBIMGSCv36mm8
MGSCv36X104,560,270 - 104,561,243 (-)NCBIMGSCv36mm8
CeleraX99,400,624 - 99,401,647 (+)NCBICelera
Cytogenetic MapXE1NCBI
cM MapX48.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm6427
22 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENSMUST00000118721
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_018130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL805935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000118721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX111,700,839 - 111,701,817 (+)Ensembl
GRCm38.p6 EnsemblX112,791,142 - 112,792,120 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081555 Ensembl, ENTREZGENE
MGD MGI:3649064 ENTREZGENE
NCBI Gene 623412 ENTREZGENE
PhenoGen Gm6427 PhenoGen