Gm8310 (predicted gene 8310) - Rat Genome Database

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Gene: Gm8310 (predicted gene 8310) Mus musculus
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Symbol: Gm8310
Name: predicted gene 8310
RGD ID: 2311811
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG666824
Related Functional Gene: Alpl  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X65,807,282 - 65,808,377 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX65,806,988 - 65,808,180 (+)EnsemblGRCm39 Ensembl
GRCm38X66,763,676 - 66,764,771 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX66,763,382 - 66,764,574 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X64,016,557 - 64,017,746 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X63,024,068 - 63,025,239 (+)NCBIMGSCv36mm8
CeleraX55,007,019 - 55,008,208 (-)NCBICelera
Cytogenetic MapXA7.1NCBI
cM MapX34.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm8310
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:223
Count of miRNA genes:208
Interacting mature miRNAs:219
Transcripts:ENSMUST00000117526
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12050071Hstx2_mhybrid sterility, X chromosome 2 (mouse)X6392424768624700Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5077237570434751Mouse
12880401Emlq3_memotional learning QTL 3 (mouse)X5799218370090431Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_018068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL731773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000117526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX65,806,988 - 65,808,180 (+)Ensembl
GRCm38.p6 EnsemblX66,763,382 - 66,764,574 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084074 Ensembl
MGD MGI:3643546 ENTREZGENE
NCBI Gene 666824 ENTREZGENE
PhenoGen Gm8310 PhenoGen