TRIM51BP (tripartite motif-containing 51B, pseudogene) - Rat Genome Database

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Gene: TRIM51BP (tripartite motif-containing 51B, pseudogene) Homo sapiens
Analyze
Symbol: TRIM51BP
Name: tripartite motif-containing 51B, pseudogene
RGD ID: 2311725
HGNC Page HGNC:37145
Description: INTERACTS WITH ethylparaben
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: SPRYD5P; SPRYD5P1
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381189,852,840 - 89,863,071 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1189,854,953 - 89,862,893 (+)EnsemblGRCh38hg38GRCh38
GRCh371189,586,008 - 89,596,239 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361189,225,656 - 89,235,882 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map11q14.3NCBI
HuRef1185,773,558 - 85,780,295 (+)NCBIHuRef
CHM1_11189,473,763 - 89,479,585 (+)NCBICHM1_1
T2T-CHM13v2.01189,772,546 - 89,782,731 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (HEP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
ethylparaben  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
Additional References at PubMed
PMID:16554811  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:101
Interacting mature miRNAs:103
Transcripts:ENST00000423506, ENST00000525732
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 12 21 1 1 13 8
Below cutoff 100 347 115 30 285 17 701 78 216 13 291 211 13 185 465

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000525732
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1189,854,953 - 89,862,893 (+)Ensembl
RefSeq Acc Id: XM_001725082
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361189,225,656 - 89,235,882 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC TRIM51BP COSMIC
Ensembl Genes ENSG00000204455 Ensembl, ENTREZGENE
GTEx ENSG00000204455 GTEx
HGNC ID HGNC:37145 ENTREZGENE
Human Proteome Map TRIM51BP Human Proteome Map
NCBI Gene 399937 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-29 TRIM51BP  tripartite motif-containing 51B, pseudogene  SPRYD5P  SPRY domain containing 5 pseudogene  Symbol and/or name change 5135510 APPROVED