4930474M22Rik (RIKEN cDNA 4930474M22 gene) - Rat Genome Database

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Gene: 4930474M22Rik (RIKEN cDNA 4930474M22 gene) Mus musculus
Analyze
Symbol: 4930474M22Rik
Name: RIKEN cDNA 4930474M22 gene
RGD ID: 2311402
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391714,609,369 - 14,619,204 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1714,609,375 - 14,619,204 (-)EnsemblGRCm39 Ensembl
GRCm381714,389,107 - 14,398,942 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1714,389,113 - 14,398,942 (-)EnsemblGRCm38mm10GRCm38
MGSCv371714,526,114 - 14,535,949 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361714,125,710 - 14,135,539 (-)NCBIMGSCv36mm8
Celera1715,190,226 - 15,200,054 (-)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 4930474M22Rik
359 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120975022Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120975022Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1219832925076769Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse

Markers in Region
Smoc2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381714,399,401 - 14,399,637UniSTSGRCm38
MGSCv371714,536,408 - 14,536,644UniSTSGRCm37
Celera1715,200,513 - 15,200,749UniSTS
Cytogenetic Map17A2UniSTS
cM Map1710.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000233310
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1714,609,375 - 14,619,204 (-)Ensembl
GRCm38.p6 Ensembl1714,389,113 - 14,398,942 (-)Ensembl
RefSeq Acc Id: NR_027986
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391714,609,369 - 14,619,204 (-)NCBI
GRCm381714,389,107 - 14,398,942 (-)ENTREZGENE
MGSCv371714,526,114 - 14,535,949 (-)RGD
Celera1715,190,226 - 15,200,054 (-)RGD
cM Map17 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein AAH89489 (Get FASTA)   NCBI Sequence Viewer  
  BAC25465 (Get FASTA)   NCBI Sequence Viewer  
  EDL20483 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000117328 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000233310 ENTREZGENE
MGD MGI:1922167 ENTREZGENE
NCBI Gene 74917 ENTREZGENE
PhenoGen 4930474M22Rik PhenoGen
RNAcentral URS0000759B1B RNACentral
UniProt Q8CES2_MOUSE UniProtKB/TrEMBL