5730522E02Rik (RIKEN cDNA 5730522E02 gene) - Rat Genome Database

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Gene: 5730522E02Rik (RIKEN cDNA 5730522E02 gene) Mus musculus
Analyze
Symbol: 5730522E02Rik
Name: RIKEN cDNA 5730522E02 gene
RGD ID: 2311279
MGI Page MGI
Description:
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: PREDICTED
Previously known as: RP23-306I3.1
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391125,566,846 - 26,160,576 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1125,552,763 - 26,160,763 (-)EnsemblGRCm39 Ensembl
GRCm381125,616,846 - 26,210,576 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1125,602,763 - 26,210,763 (-)EnsemblGRCm38mm10GRCm38
MGSCv371125,516,846 - 26,110,576 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361125,519,087 - 25,670,570 (-)NCBIMGSCv36mm8
Celera1127,757,139 - 28,122,375 (-)NCBICelera
Cytogenetic Map11A3.2- A3.3NCBI
cM Map1115.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:29055695  


Genomics

Variants

.
Variants in 5730522E02Rik
18054 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:826
Count of miRNA genes:520
Interacting mature miRNAs:598
Transcripts:ENSMUST00000101447, ENSMUST00000109511, ENSMUST00000125773, ENSMUST00000125987, ENSMUST00000135168, ENSMUST00000144503, ENSMUST00000144841, ENSMUST00000153834, ENSMUST00000179180
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1302179Mndl2_mmandible length 2 (mouse)Not determined112590609727673304Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse

Markers in Region
C86687  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381126,184,390 - 26,184,616UniSTSGRCm38
MGSCv371126,084,390 - 26,084,616UniSTSGRCm37
Celera1128,312,756 - 28,312,982UniSTS
Cytogenetic Map11A3.2-A3.3UniSTS
Whitehead/MRC_RH11424.86UniSTS
M-02769  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381125,814,840 - 25,815,024UniSTSGRCm38
MGSCv371125,714,840 - 25,715,024UniSTSGRCm37
Cytogenetic Map11A3.2-A3.3UniSTS
Whitehead/MRC_RH11414.36UniSTS
29.MMHAP62FLB5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381126,164,082 - 26,164,249UniSTSGRCm38
MGSCv371126,064,082 - 26,064,249UniSTSGRCm37
Celera1128,297,092 - 28,297,259UniSTS
Cytogenetic Map11A3.2-A3.3UniSTS
Whitehead_YAC11 UniSTS
D11Mit169  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381125,885,875 - 25,886,014UniSTSGRCm38
MGSCv371125,785,875 - 25,786,014UniSTSGRCm37
Celera1128,024,908 - 28,025,059UniSTS
Cytogenetic Map11A3.2-A3.3UniSTS
cM Map1115.0UniSTS
Whitehead Genetic1110.9UniSTS
Whitehead/MRC_RH11410.39UniSTS
D11Mit82  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381126,061,780 - 26,061,942UniSTSGRCm38
MGSCv371125,961,780 - 25,961,942UniSTSGRCm37
Celera1128,194,326 - 28,194,472UniSTS
Cytogenetic Map11A3.2-A3.3UniSTS
cM Map1114.0UniSTS
Whitehead Genetic1110.9UniSTS
Whitehead_YAC11 UniSTS
D11Mit229  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381125,956,097 - 25,956,218UniSTSGRCm38
MGSCv371125,856,097 - 25,856,218UniSTSGRCm37
Celera1128,097,906 - 28,098,027UniSTS
Cytogenetic Map11A3.2-A3.3UniSTS
cM Map1114.0UniSTS
Whitehead Genetic1110.9UniSTS
AU022499  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381125,989,169 - 25,989,382UniSTSGRCm38
MGSCv371125,889,169 - 25,889,382UniSTSGRCm37
Celera1128,124,748 - 28,124,961UniSTS
Cytogenetic Map11A3.2-A3.3UniSTS
cM Map1111.0UniSTS
Whitehead/MRC_RH11417.21UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000109511   ⟹   ENSMUSP00000105137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1125,569,087 - 26,160,572 (-)Ensembl
GRCm38.p6 Ensembl1125,619,087 - 26,210,572 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1125,567,668 - 26,160,569 (-)Ensembl
GRCm38.p6 Ensembl1125,617,668 - 26,210,569 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1126,053,185 - 26,160,763 (-)Ensembl
GRCm38.p6 Ensembl1126,103,185 - 26,210,763 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1125,799,297 - 26,031,600 (-)Ensembl
GRCm38.p6 Ensembl1125,849,297 - 26,081,600 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1125,552,816 - 25,570,098 (-)Ensembl
GRCm38.p6 Ensembl1125,602,816 - 25,620,098 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1125,585,312 - 25,602,068 (-)Ensembl
GRCm38.p6 Ensembl1125,635,312 - 25,652,068 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1125,552,763 - 25,598,147 (-)Ensembl
GRCm38.p6 Ensembl1125,602,763 - 25,648,147 (-)Ensembl
RefSeq Acc Id: ENSMUST00000179180   ⟹   ENSMUSP00000137096
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1125,597,915 - 25,719,141 (-)Ensembl
GRCm38.p6 Ensembl1125,647,915 - 25,769,141 (-)Ensembl
RefSeq Acc Id: NR_027973
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391125,566,846 - 26,160,576 (-)NCBI
GRCm381125,616,846 - 26,210,576 (-)ENTREZGENE
MGSCv371125,516,846 - 26,110,576 (-)RGD
Celera1127,757,139 - 28,122,375 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAC38109 (Get FASTA)   NCBI Sequence Viewer  
  EDL07909 (Get FASTA)   NCBI Sequence Viewer  
  EDL07910 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000105137.2
  ENSMUSP00000137096.2
RefSeq Acc Id: ENSMUSP00000137096   ⟸   ENSMUST00000179180
RefSeq Acc Id: ENSMUSP00000105137   ⟸   ENSMUST00000109511

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SP45-F1-model_v2 AlphaFold Q5SP45 1-163 view protein structure

Promoters
RGD ID:6820313
Promoter ID:MM_KWN:6730
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   ES_Cell,   Liver
Transcripts:ENSMUST00000101447,   NR_027973_5730522E02RIK,   OTTMUST00000011820,   UC007IGB.1,   UC007IGC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361126,110,191 - 26,110,691 (-)MPROMDB
RGD ID:8674140
Promoter ID:EPDNEW_M15101
Type:single initiation site
Name:5730522E02Rik_2
Description:Mus musculus RIKEN cDNA 5730522E02 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15102  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381126,176,239 - 26,176,299EPDNEW
RGD ID:8674142
Promoter ID:EPDNEW_M15102
Type:multiple initiation site
Name:5730522E02Rik_1
Description:Mus musculus RIKEN cDNA 5730522E02 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15101  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381126,210,559 - 26,210,619EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000032985 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000109511.8 UniProtKB/TrEMBL
  ENSMUST00000179180.2 UniProtKB/TrEMBL
MGD MGI:1917876 ENTREZGENE
NCBI Gene 70626 ENTREZGENE
PhenoGen 5730522E02Rik PhenoGen
RNAcentral URS000075CE1E RNACentral
UniProt J3QP50_MOUSE UniProtKB/TrEMBL
  Q5SP45_MOUSE UniProtKB/TrEMBL
  Q8C4U9_MOUSE UniProtKB/TrEMBL