Gm15209 (predicted gene 15209) - Rat Genome Database

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Gene: Gm15209 (predicted gene 15209) Mus musculus
Analyze
Symbol: Gm15209
Name: predicted gene 15209
RGD ID: 2310981
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,677,692 - 161,678,150 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX161,677,751 - 161,678,150 (-)EnsemblGRCm39 Ensembl
GRCm38X162,894,704 - 162,895,154 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,894,755 - 162,895,154 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X159,332,687 - 159,333,086 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X159,332,687 - 159,333,086 (-)NCBIMGSCv36mm8
CeleraX146,118,680 - 146,119,079 (-)NCBICelera
Cytogenetic MapXF4NCBI
cM MapX75.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm15209
13 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:137
Interacting mature miRNAs:142
Transcripts:ENSMUST00000117703
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse
1357619Obsty5_mobesity 5 (mouse)Not determinedX160212893164149284Mouse


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AL807822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000117703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX161,677,751 - 161,678,150 (-)Ensembl
GRCm38.p6 EnsemblX162,894,755 - 162,895,154 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081917 Ensembl, ENTREZGENE
MGD MGI:3705716 ENTREZGENE
NCBI Gene 100041607 ENTREZGENE
PhenoGen Gm15209 PhenoGen