Gm2176 (predicted gene 2176) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gm2176 (predicted gene 2176) Mus musculus
Analyze
Symbol: Gm2176
Name: predicted gene 2176 (Ensembl:glucosamine-6-phosphate deaminase 1 pseudogene)
RGD ID: 2310904
MGI Page MGI
Description:
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: A430076E10Rik
Related Functional Gene: Gnpda1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391880,585,107 - 80,587,761 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1880,585,107 - 80,587,761 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1880,586,468 - 80,587,230 (-)EnsemblGRCm39 Ensembl
GRCm381880,541,892 - 80,544,546 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1880,541,892 - 80,544,546 (-)EnsemblGRCm38mm10GRCm38
MGSCv371880,738,631 - 80,741,285 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361880,738,636 - 80,739,425 (-)NCBIMGSCv36mm8
Celera1881,651,321 - 81,653,975 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1853.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Variants

.
Variants in Gm2176
104 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186127244881491831Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186127244882604728Mouse
1301798Hdlq31_mHDL QTL 31 (mouse)Not determined186714438990720763Mouse
10401904Sicd4_mseizure-induced cell death 4 (mouse)Not determined186980527685514143Mouse
15014786Mvlq2_mmacrovesicular liver lesion QTL 2 (mouse)187156938890720763Mouse
1302183Pas7_mpulmonary adenoma susceptibility 7 (mouse)Not determined187274559484144595Mouse
4142153Idd21.1_minsulin dependent diabetes susceptibility 21.1 (mouse)Not determined187456233884144595Mouse
4141757Sicd1_mseizure-induced cell death 1 (mouse)Not determined188017526489590914Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000236225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1880,585,107 - 80,587,761 (-)Ensembl
GRCm38.p6 Ensembl1880,541,892 - 80,544,546 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1880,586,468 - 80,587,230 (-)Ensembl
GRCm38.p6 Ensembl1880,543,253 - 80,544,015 (-)Ensembl
RefSeq Acc Id: NR_028424
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391880,585,107 - 80,587,761 (-)NCBI
GRCm381880,541,892 - 80,544,546 (-)ENTREZGENE
MGSCv371880,738,631 - 80,741,285 (-)RGD
Celera1881,651,321 - 81,653,975 (-)RGD
cM Map18 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000118319 Ensembl
  ENSMUSG00000121831 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000236225 ENTREZGENE
MGD MGI:3780346 ENTREZGENE
NCBI Gene 100039348 ENTREZGENE
PhenoGen Gm2176 PhenoGen