Hspd1-ps2 (heat shock protein 1 (chaperonin), pseudogene 2) - Rat Genome Database
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Gene: Hspd1-ps2 (heat shock protein 1 (chaperonin), pseudogene 2) Mus musculus
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Symbol: Hspd1-ps2
Name: heat shock protein 1 (chaperonin), pseudogene 2
RGD ID: 2310336
MGI Page MGI
Description:
Type: pseudo
RefSeq Status: INFERRED
Also known as: EG384830; Gm5349; Hspd-4p
Related Functional Gene: Hspd1  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39862,939,429 - 62,941,583 (-)NCBIGRCm39mm39
GRCm38862,486,395 - 62,488,549 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl862,486,792 - 62,488,488 (-)EnsemblGRCm38mm10GRCm38
MGSCv37864,965,391 - 64,967,346 (-)NCBIGRCm37mm9NCBIm37
MGSCv36865,378,983 - 65,380,681 (-)NCBImm8
Celera865,058,284 - 65,060,239 (-)NCBICelera
Cytogenetic Map8B3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:20193073  


Genomics

Position Markers
D8Mit70  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38862,488,890 - 62,489,062UniSTSGRCm38
MGSCv37864,967,687 - 64,967,859UniSTSGRCm37
Celera865,060,580 - 65,060,750UniSTS
Cytogenetic Map8B3.1UniSTS
cM Map832.0UniSTS
Whitehead Genetic833.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83383736267837502Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_019570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000210003
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl862,486,792 - 62,488,488 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000109687 Ensembl
MGD MGI:3647040 ENTREZGENE
NCBI Gene 384830 ENTREZGENE
PhenoGen Hspd1-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-05-26 Hspd1-ps2  heat shock protein 1 (chaperonin), pseudogene 2  Gm5349  predicted gene 5349  Symbol and/or name change 5135510 APPROVED