Gm6446 (predicted gene 6446) - Rat Genome Database

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Gene: Gm6446 (predicted gene 6446) Mus musculus
Analyze
Symbol: Gm6446
Name: predicted gene 6446
RGD ID: 2309268
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG623697
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X144,616,313 - 144,617,130 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX144,616,313 - 144,617,130 (+)EnsemblGRCm39 Ensembl
GRCm38X145,833,317 - 145,834,134 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX145,833,317 - 145,834,134 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X142,267,860 - 142,268,677 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X141,079,685 - 141,080,502 (+)NCBIMGSCv36mm8
CeleraX129,782,552 - 129,783,369 (+)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX67.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm6446
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:111
Interacting mature miRNAs:112
Transcripts:ENSMUST00000120604
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1301276Tswt_mtestis weight (mouse)Not determinedX138376411150789338Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AL672091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000120604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX144,616,313 - 144,617,130 (+)Ensembl
GRCm38.p6 EnsemblX145,833,317 - 145,834,134 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080915 Ensembl, ENTREZGENE
MGD MGI:3643050 ENTREZGENE
NCBI Gene 623697 ENTREZGENE
PhenoGen Gm6446 PhenoGen