Gm2396 (predicted gene 2396) - Rat Genome Database

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Gene: Gm2396 (predicted gene 2396) Mus musculus
Analyze
Symbol: Gm2396
Name: predicted gene 2396
RGD ID: 2308482
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 100039741; uncharacterized protein LOC105245043
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39988,756,786 - 88,835,615 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl988,761,047 - 88,819,395 (-)EnsemblGRCm39 Ensembl
GRCm38988,874,733 - 88,953,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl988,878,994 - 88,937,342 (-)EnsemblGRCm38mm10GRCm38
MGSCv37988,794,708 - 88,832,164 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36988,805,691 - 88,832,180 (-)NCBIMGSCv36mm8
Cytogenetic Map9E3.1NCBI
cM Map947.24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Gm2396
753 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976024387101406120Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001378764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003948400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003948402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003948403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CT030259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000185501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl988,798,993 - 88,804,674 (-)Ensembl
GRCm38.p6 Ensembl988,916,940 - 88,922,621 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl988,761,047 - 88,819,395 (-)Ensembl
GRCm38.p6 Ensembl988,878,994 - 88,937,342 (-)Ensembl
RefSeq Acc Id: NM_001378764   ⟹   NP_001365693
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,759,336 - 88,819,395 (-)NCBI
GRCm38988,877,283 - 88,937,342 (-)NCBI
Sequence:
RefSeq Acc Id: NR_166072
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,759,336 - 88,819,395 (-)NCBI
GRCm38988,877,283 - 88,937,342 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313723   ⟹   XP_017169212
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,756,786 - 88,835,615 (-)NCBI
GRCm38988,874,733 - 88,953,562 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313724   ⟹   XP_017169213
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,759,520 - 88,819,467 (-)NCBI
GRCm38988,877,419 - 88,937,415 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313725   ⟹   XP_017169214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,759,520 - 88,819,467 (-)NCBI
GRCm38988,877,419 - 88,937,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313726   ⟹   XP_017169215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,759,520 - 88,819,466 (-)NCBI
GRCm38988,877,419 - 88,937,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313727   ⟹   XP_017169216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,762,060 - 88,819,464 (-)NCBI
GRCm38988,880,016 - 88,937,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244785   ⟹   XP_030100645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,756,786 - 88,816,850 (-)NCBI
GRCm38988,874,733 - 88,934,797 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003948400
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,759,520 - 88,819,463 (-)NCBI
GRCm38988,877,419 - 88,937,412 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003948402
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,756,786 - 88,819,463 (-)NCBI
GRCm38988,874,733 - 88,937,411 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003948403
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,759,520 - 88,819,462 (-)NCBI
GRCm38988,877,419 - 88,937,411 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004935298
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,761,965 - 88,819,461 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004935299
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,756,786 - 88,819,455 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004935300
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,766,425 - 88,819,455 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004935301
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,768,546 - 88,819,455 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_017169212   ⟸   XM_017313723
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030100645   ⟸   XM_030244785
- Peptide Label: isoform X6
RefSeq Acc Id: XP_017169214   ⟸   XM_017313725
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017169213   ⟸   XM_017313724
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017169215   ⟸   XM_017313726
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017169216   ⟸   XM_017313727
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001365693   ⟸   NM_001378764

Promoters
RGD ID:15093638
Promoter ID:EPDNEWNC_M1548
Type:single initiation site
Name:Gm2396_1
Description:predicted gene 2396 [Source:MGI Symbol;Acc:MGI:3780564]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38988,937,342 - 88,937,402EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099930 Ensembl
MGD MGI:3780564 ENTREZGENE
NCBI Gene Gm2396 ENTREZGENE
PhenoGen Gm2396 PhenoGen