1700024F20Rik (RIKEN cDNA 1700024F20 gene) - Rat Genome Database
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Gene: 1700024F20Rik (RIKEN cDNA 1700024F20 gene) Mus musculus
Analyze
Symbol: 1700024F20Rik
Name: RIKEN cDNA 1700024F20 gene
RGD ID: 2308476
MGI Page MGI
Description:
Type: gene
Also known as: 100039768; Gm2415; predicted gene 2415
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm389118,924,822 - 118,928,811 (-)NCBIGRCm38GRCm38mm10GRCm38
MGSCv379118,833,940 - 118,837,929 (-)NCBIGRCm37mm9NCBIm37
MGSCv369118,815,062 - 118,835,763 (-)NCBImm8
Celera9119,392,485 - 119,396,535 (-)NCBICelera
Cytogenetic Map9F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AA052485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_105328
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv379118,833,940 - 118,837,929 (-)RGD
RefSeq Acc Id: XR_108163
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera9119,392,485 - 119,396,535 (-)RGD
Promoters
RGD ID:6844586
Promoter ID:MM_KWN:59105
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000083593,   OTTMUST00000083594,   OTTMUST00000083595,   XM_001473463_GM2415
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369118,836,181 - 118,836,681 (-)MPROMDB
RGD ID:15093684
Promoter ID:EPDNEWNC_M1596
Type:initiation region
Name:Gm2415_1
Description:predicted gene 2415 [Source:MGI Symbol;Acc:MGI:3780582]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389118,926,412 - 118,926,472EPDNEWNC

Additional Information

Database Acc Id Source(s)
MGD MGI:1919101 ENTREZGENE
NCBI Gene 100039768 ENTREZGENE
PhenoGen 1700024F20Rik PhenoGen
UniGene Mm.47093 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-12 1700024F20Rik  RIKEN cDNA 1700024F20 gene  Gm2415  predicted gene 2415  Symbol and/or name change 5135510 APPROVED
2016-04-08 Gm2415  predicted gene 2415  1700024F20Rik  RIKEN cDNA 1700024F20 gene  Data Merged 737654 PROVISIONAL