Gm6558 (predicted gene 6558) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm6558 (predicted gene 6558) Mus musculus
Analyze
Symbol: Gm6558
Name: predicted gene 6558
RGD ID: 2308183
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: MODEL
Previously known as: 625125
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39331,698,964 - 31,741,991 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl331,698,945 - 31,741,991 (-)EnsemblGRCm39 Ensembl
GRCm38331,644,815 - 31,687,842 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl331,644,796 - 31,690,585 (-)EnsemblGRCm38mm10GRCm38
MGSCv37331,543,737 - 31,586,764 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36331,835,693 - 31,881,465 (-)NCBIMGSCv36mm8
Cytogenetic Map3A3NCBI
cM Map315.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm6558
1452 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse

Markers in Region
UniSTS:225387  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38331,684,584 - 31,684,732UniSTSGRCm38
GRCm38328,898,515 - 28,898,663UniSTSGRCm38
MGSCv37331,583,506 - 31,583,654UniSTSGRCm37
MGSCv37328,797,437 - 28,797,585UniSTSGRCm37
Celera331,586,787 - 31,586,935UniSTS
Cytogenetic Map3A3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006535589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC098740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000191934
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl331,698,945 - 31,741,991 (-)Ensembl
GRCm38.p6 Ensembl331,644,796 - 31,687,842 (-)Ensembl
RefSeq Acc Id: ENSMUST00000192046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl331,738,626 - 31,744,734 (-)Ensembl
GRCm38.p6 Ensembl331,684,477 - 31,690,585 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195395
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl331,727,770 - 31,744,734 (-)Ensembl
GRCm38.p6 Ensembl331,673,621 - 31,690,585 (-)Ensembl
RefSeq Acc Id: XM_006535589   ⟹   XP_006535652
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38331,644,815 - 31,687,842 (-)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000103499 Ensembl, ENTREZGENE
MGD MGI:3779607 ENTREZGENE
NCBI Gene 625125 ENTREZGENE
PhenoGen Gm6558 PhenoGen