Gm7876 (predicted gene 7876) - Rat Genome Database

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Gene: Gm7876 (predicted gene 7876) Mus musculus
Analyze
No known orthologs.
Symbol: Gm7876
Name: predicted gene 7876
RGD ID: 2308179
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 665981; alpha takusan-like; uncharacterized protein Gm7876; uncharacterized protein LOC108168186
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391417,752,415 - 17,760,472 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1417,752,093 - 17,805,584 (-)EnsemblGRCm39 Ensembl
GRCm38144,709,301 - 4,717,358 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl144,709,238 - 4,717,678 (+)EnsemblGRCm38mm10GRCm38
MGSCv37144,812,340 - 4,820,397 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36143,061,887 - 3,168,110 (-)NCBIMGSCv36mm8
Cytogenetic Map14A2NCBI
cM Map142.55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm7876
211 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:312
Count of miRNA genes:216
Interacting mature miRNAs:224
Transcripts:ENSMUST00000169465, ENSMUST00000171305
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412071Ssen3_msuseptibility to Sendai virus 3 (mouse)Not determined14126987934Mouse
11532711Sluc40_msusceptibility to lung cancer 40 (mouse)14127379943Mouse
13824988Phsq1_mpercent hyperactivated sperm QTL 1 (mouse)14305000119469772Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141265Appd2_mAPP associated premature death 2 (mouse)Not determined14594555230114862Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017316334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000169465   ⟹   ENSMUSP00000127177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1417,752,109 - 17,760,535 (-)Ensembl
GRCm38.p6 Ensembl144,709,238 - 4,717,664 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171305   ⟹   ENSMUSP00000129841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1417,752,095 - 17,760,477 (-)Ensembl
GRCm38.p6 Ensembl144,709,296 - 4,717,678 (+)Ensembl
RefSeq Acc Id: ENSMUST00000249500   ⟹   ENSMUSP00000159780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1417,752,093 - 17,805,578 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249501   ⟹   ENSMUSP00000159781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1417,752,095 - 17,805,584 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249502   ⟹   ENSMUSP00000159782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1417,752,097 - 17,760,480 (-)Ensembl
RefSeq Acc Id: XM_017316334   ⟹   XP_017171823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391417,752,415 - 17,760,472 (-)NCBI
GRCm38144,709,301 - 4,717,358 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_017171823 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000126316.2
  ENSMUSP00000126667.2
  ENSMUSP00000127177
  ENSMUSP00000127177.2
  ENSMUSP00000129841.2
  ENSMUSP00000159780.1
  ENSMUSP00000159781.1
  ENSMUSP00000159782.1
Reference Protein Sequences
RefSeq Acc Id: XP_017171823   ⟸   XM_017316334
- UniProtKB: K7N6V6 (UniProtKB/TrEMBL),   A0AA74KT71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000129841   ⟸   ENSMUST00000171305
RefSeq Acc Id: ENSMUSP00000127177   ⟸   ENSMUST00000169465
RefSeq Acc Id: ENSMUSP00000159781   ⟸   ENSMUST00000249501
RefSeq Acc Id: ENSMUSP00000159782   ⟸   ENSMUST00000249502
RefSeq Acc Id: ENSMUSP00000159780   ⟸   ENSMUST00000249500
Protein Domains
Disks large homolog 5 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-K7N6T8-F1-model_v2 AlphaFold K7N6T8 1-263 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3779769 AgrOrtholog
Ensembl Genes ENSMUSG00000091148 UniProtKB/TrEMBL
  ENSMUSG00000091700 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000167902.2 UniProtKB/TrEMBL
  ENSMUST00000169364.8 UniProtKB/TrEMBL
  ENSMUST00000169465 ENTREZGENE
  ENSMUST00000169465.8 UniProtKB/TrEMBL
  ENSMUST00000171305.2 UniProtKB/TrEMBL
  ENSMUST00000249500.1 UniProtKB/TrEMBL
  ENSMUST00000249501.1 UniProtKB/TrEMBL
  ENSMUST00000249502.1 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
KEGG Report mmu:100041177 UniProtKB/TrEMBL
  mmu:108168186 UniProtKB/TrEMBL
MGD MGI:3779769 ENTREZGENE
NCBI Gene Gm7876 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen Gm7876 PhenoGen
UniProt A0AA74KT06_MOUSE UniProtKB/TrEMBL
  A0AA74KT71 ENTREZGENE, UniProtKB/TrEMBL
  A0AA74KTC8_MOUSE UniProtKB/TrEMBL
  K7N6T8_MOUSE UniProtKB/TrEMBL
  K7N6V6 ENTREZGENE, UniProtKB/TrEMBL