Gm3015 (predicted gene 3015) - Rat Genome Database

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Gene: Gm3015 (predicted gene 3015) Mus musculus
Analyze
No known orthologs.
Symbol: Gm3015 (Ensembl: Gm8082)
Name: predicted gene 3015 (Ensembl:predicted gene 8082)
RGD ID: 2307880
MGI Page MGI
Description:
Type: ncrna (Ensembl: unprocessed_pseudogene)
RefSeq Status: MODEL
Previously known as: 100040875
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391442,586,244 - 42,590,802 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1442,585,482 - 42,589,675 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1442,846,561 - 42,851,102 (-)EnsemblGRCm39 Ensembl
GRCm381442,766,423 - 42,768,691 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1442,763,525 - 42,768,821 (-)EnsemblGRCm38mm10GRCm38
MGSCv371443,341,874 - 43,347,769 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv371443,341,874 - 43,347,769 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361443,341,874 - 43,347,769 (-)NCBIMGSCv36mm8
Cytogenetic Map14BNCBI
cM Map1422.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm3015
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:287
Count of miRNA genes:248
Interacting mature miRNAs:263
Transcripts:ENSMUST00000169384, ENSMUST00000179803
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_874554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000169384   ⟹   ENSMUSP00000133272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1442,585,482 - 42,589,675 (-)Ensembl
GRCm38.p6 Ensembl1442,763,525 - 42,768,821 (-)Ensembl
RefSeq Acc Id: ENSMUST00000179803   ⟹   ENSMUSP00000136555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1442,587,442 - 42,590,759 (-)Ensembl
GRCm38.p6 Ensembl1442,765,485 - 42,768,802 (-)Ensembl
RefSeq Acc Id: XR_874554
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391442,586,244 - 42,590,802 (-)NCBI
GRCm381442,766,423 - 42,768,691 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3781193 AgrOrtholog
Ensembl Genes ENSMUSG00000094349 Ensembl
  ENSMUSG00000095466 Ensembl
MGD MGI:3781193 ENTREZGENE
NCBI Gene Gm3015 ENTREZGENE
PhenoGen Gm3015 PhenoGen