Gm6201 (predicted gene 6201) - Rat Genome Database

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Gene: Gm6201 (predicted gene 6201) Mus musculus
Analyze
Symbol: Gm6201
Name: predicted gene 6201
RGD ID: 2307750
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 621103
Related Functional Gene: Pls3  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914105,436,531 - 105,438,861 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14105,436,762 - 105,438,535 (-)EnsemblGRCm39 Ensembl
GRCm3814105,199,095 - 105,201,425 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14105,199,326 - 105,201,099 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714105,598,312 - 105,600,642 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614104,084,803 - 104,087,105 (-)NCBIMGSCv36mm8
Celera14103,812,984 - 103,815,314 (-)NCBICelera
Cytogenetic Map14E2.3NCBI
cM Map1455.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10922068  


Genomics

Variants

.
Variants in Gm6201
95 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse
4142508Tgq25_mtriglyceride QTL 25 (mouse)Not determined85134068119134068Mouse
12792981Fbmd5_mfemoral bone mineral density 5, females only (mouse)1499838217125033054Mouse

Markers in Region
D14Ertd426e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3814105,201,084 - 105,201,324UniSTSGRCm38
MGSCv3714105,600,301 - 105,600,541UniSTSGRCm37
Celera14103,814,973 - 103,815,213UniSTS
Cytogenetic Map14E2.3UniSTS
cM Map1450.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_016666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000226852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14105,436,762 - 105,438,535 (-)Ensembl
GRCm38.p6 Ensembl14105,199,326 - 105,201,099 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000115247 Ensembl
MGD MGI:3779571 ENTREZGENE
NCBI Gene 621103 ENTREZGENE
PhenoGen Gm6201 PhenoGen