Krtap10-23 (keratin associated protein 10-23) - Rat Genome Database

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Gene: Krtap10-23 (keratin associated protein 10-23) Mus musculus
Analyze
Symbol: Krtap10-23 (Ensembl: Gm3250)
Name: keratin associated protein 10-23 (Ensembl:predicted gene 3250)
RGD ID: 2307659
MGI Page MGI
Description: Orthologous to several human genes including KRTAP10-3 (keratin associated protein 10-3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 100041281; Gm3250; keratin-associated protein 10-8; uncharacterized protein LOC100041281
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,617,567 - 77,618,449 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,617,684 - 77,618,376 (-)EnsemblGRCm39 Ensembl
GRCm381077,781,733 - 77,782,615 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,781,850 - 77,782,542 (-)EnsemblGRCm38mm10GRCm38
MGSCv371077,244,595 - 77,245,287 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,244,595 - 77,245,287 (-)NCBIMGSCv36mm8
Celera1078,827,130 - 78,827,822 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Krtap10-23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,617,567 - 77,618,449 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,617,684 - 77,618,376 (-)EnsemblGRCm39 Ensembl
GRCm381077,781,733 - 77,782,615 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,781,850 - 77,782,542 (-)EnsemblGRCm38mm10GRCm38
MGSCv371077,244,595 - 77,245,287 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,244,595 - 77,245,287 (-)NCBIMGSCv36mm8
Celera1078,827,130 - 78,827,822 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
KRTAP10-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,538,981 - 44,540,195 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,538,981 - 44,540,195 (-)EnsemblGRCh38hg38GRCh38
GRCh372145,958,864 - 45,960,078 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362144,783,496 - 44,784,506 (-)NCBINCBI36Build 36hg18NCBI36
Celera2131,066,742 - 31,067,752 (-)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2131,332,892 - 31,333,902 (-)NCBIHuRef
CHM1_12145,519,670 - 45,520,680 (-)NCBICHM1_1
T2T-CHM13v2.02142,899,371 - 42,900,585 (-)NCBIT2T-CHM13v2.0
Krtap10-1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82010,880,182 - 10,881,054 (+)NCBIGRCr8
mRatBN7.22010,880,524 - 10,881,445 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2010,855,181 - 10,864,362 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02011,596,720 - 11,597,693 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2011,596,775 - 11,597,647 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02013,762,857 - 13,763,729 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2012,383,091 - 12,384,064 (+)NCBICelera
Cytogenetic Map20p12NCBI

Variants

.
Variants in Krtap10-23
24 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:154
Count of miRNA genes:143
Interacting mature miRNAs:153
Transcripts:ENSMUST00000167358
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse

Markers in Region
AA589524  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371077,316,328 - 77,316,416UniSTSGRCm37
Celera1078,899,304 - 78,899,392UniSTS
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
Whitehead/MRC_RH10878.6UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000167358   ⟹   ENSMUSP00000132276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,617,684 - 77,618,376 (-)Ensembl
GRCm38.p6 Ensembl1077,781,850 - 77,782,542 (-)Ensembl
RefSeq Acc Id: NM_001370833   ⟹   NP_001357762
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,617,567 - 77,618,449 (-)NCBI
GRCm381077,781,733 - 77,782,615 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001357762 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL31783 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000132276
  ENSMUSP00000132276.2
Reference Protein Sequences
RefSeq Acc Id: NP_001357762   ⟸   NM_001370833
- UniProtKB: E9Q1M3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000132276   ⟸   ENSMUST00000167358

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q1M3-F1-model_v2 AlphaFold E9Q1M3 1-230 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3781428 AgrOrtholog
Ensembl Genes ENSMUSG00000096481 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000167358 ENTREZGENE
  ENSMUST00000167358.2 UniProtKB/TrEMBL
InterPro Keratin_B2 UniProtKB/TrEMBL
MGD MGI:3781428 ENTREZGENE
NCBI Gene 100041281 ENTREZGENE
PANTHER KERATIN-ASSOCIATED PROTEIN 10-6 UniProtKB/TrEMBL
  Keratin_B2 UniProtKB/TrEMBL
Pfam Keratin_B2_2 UniProtKB/TrEMBL
PhenoGen Krtap10-23 PhenoGen
UniProt E9Q1M3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-02-19 Krtap10-23  keratin associated protein 10-23  Gm3250  predicted gene 3250  Symbol and/or name updated 27372883 PROVISIONAL