Gm3348 (predicted gene 3348) - Rat Genome Database

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Gene: Gm3348 (predicted gene 3348) Mus musculus
Analyze
Symbol: Gm3348
Name: predicted gene 3348
RGD ID: 2307532
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 100041456; Gm17050; Gm17128; predicted gene 17050
Related Functional Gene: Esd  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391417,082,994 - 17,083,987 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1417,083,118 - 17,083,967 (-)EnsemblGRCm39 Ensembl
GRCm38145,385,786 - 5,386,779 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl145,385,806 - 5,386,655 (+)EnsemblGRCm38mm10GRCm38
MGSCv37146,673,886 - 6,674,732 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36146,625,664 - 6,714,472 (+)NCBIMGSCv36mm8
Cytogenetic Map14A2NCBI
cM Map143.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm3348
33 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:113
Interacting mature miRNAs:115
Transcripts:ENSMUST00000177813
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412071Ssen3_msuseptibility to Sendai virus 3 (mouse)Not determined14126987934Mouse
11532711Sluc40_msusceptibility to lung cancer 40 (mouse)14127379943Mouse
13824988Phsq1_mpercent hyperactivated sperm QTL 1 (mouse)14305000119469772Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141265Appd2_mAPP associated premature death 2 (mouse)Not determined14594555230114862Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000177813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1417,083,118 - 17,083,967 (-)Ensembl
GRCm38.p6 Ensembl145,385,806 - 5,386,655 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000106752 Ensembl, ENTREZGENE
MGD MGI:3781526 ENTREZGENE
NCBI Gene 100417767 ENTREZGENE
PhenoGen Gm3348 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 Gm3348  predicted gene 3348  Gm17050  predicted gene 17050  Data merged from RGD:5146958 737654 PROVISIONAL