Gm14594 (predicted gene 14594) - Rat Genome Database

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Gene: Gm14594 (predicted gene 14594) Mus musculus
Analyze
Symbol: Gm14594 (Ensembl: Gm16430)
Name: predicted gene 14594 (Ensembl:predicted gene 16430)
RGD ID: 2306372
MGI Page MGI
Description: Human ortholog(s) of this gene implicated in spermatogenic failure 4. Orthologous to human SYCP3 (synaptonemal complex protein 3). [provided by Alliance of Genome Resources, Apr 2022]
Type: protein-coding
RefSeq Status: MODEL
Previously known as: X-linked lymphocyte-regulated protein PM1-like
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X53,442,064 - 53,458,978 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX53,533,175 - 53,549,983 (+)EnsemblGRCm39 Ensembl
GRCm39 EnsemblX53,624,178 - 53,640,986 (+)EnsemblGRCm39 Ensembl
GRCm39 EnsemblX53,443,706 - 53,458,897 (+)EnsemblGRCm39 Ensembl
GRCm38X54,440,097 - 54,457,011 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX54,622,211 - 54,639,019 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 EnsemblX54,531,208 - 54,548,016 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 EnsemblX54,441,739 - 54,456,930 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X51,744,916 - 51,760,185 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X50,636,366 - 50,651,488 (+)NCBIMGSCv36mm8
Cytogenetic MapXA5NCBI
cM MapX30.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm14594
336 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:174
Count of miRNA genes:136
Interacting mature miRNAs:140
Transcripts:ENSMUST00000118052, ENSMUST00000164997
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5077237570434751Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
4142286Pubt1_mpubertal timing 1 (mouse)Not determined5241220061880496Mouse
4141126Lvic5_mliver iron content 5 (mouse)Not determined5241220063027567Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_981599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CR954961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000118052
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX53,443,706 - 53,458,897 (+)Ensembl
GRCm38.p6 EnsemblX54,441,739 - 54,456,930 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169006   ⟹   ENSMUSP00000132567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX53,625,767 - 53,640,983 (+)Ensembl
GRCm38.p6 EnsemblX54,623,800 - 54,639,016 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169247   ⟹   ENSMUSP00000136048
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX53,534,764 - 53,549,833 (+)Ensembl
GRCm38.p6 EnsemblX54,532,797 - 54,547,866 (+)Ensembl
RefSeq Acc Id: ENSMUST00000178145   ⟹   ENSMUSP00000136901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX53,624,178 - 53,640,986 (+)Ensembl
GRCm38.p6 EnsemblX54,622,211 - 54,639,019 (+)Ensembl
RefSeq Acc Id: ENSMUST00000180150   ⟹   ENSMUSP00000136138
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX53,533,175 - 53,549,983 (+)Ensembl
GRCm38.p6 EnsemblX54,531,208 - 54,548,016 (+)Ensembl
RefSeq Acc Id: XM_981599   ⟹   XP_986693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X53,442,064 - 53,458,978 (+)NCBI
GRCm38X54,440,097 - 54,457,011 (+)NCBI
MGSCv37X51,744,916 - 51,760,185 (+)RGD
cM MapX ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs XP_986693 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000132567.3
  ENSMUSP00000136048.2
  ENSMUSP00000136138.2
  ENSMUSP00000136901.2
Reference Protein Sequences
RefSeq Acc Id: XP_986693   ⟸   XM_981599
- UniProtKB: A6X8J1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136901   ⟸   ENSMUST00000178145
RefSeq Acc Id: ENSMUSP00000136048   ⟸   ENSMUST00000169247
RefSeq Acc Id: ENSMUSP00000132567   ⟸   ENSMUST00000169006
RefSeq Acc Id: ENSMUSP00000136138   ⟸   ENSMUST00000180150

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A6X8J1-F1-model_v2 AlphaFold A6X8J1 1-155 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081638 Ensembl
  ENSMUSG00000094714 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000096468 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000169006.3 UniProtKB/TrEMBL
  ENSMUST00000169247.3 UniProtKB/TrEMBL
  ENSMUST00000178145.8 UniProtKB/TrEMBL
  ENSMUST00000180150.8 UniProtKB/TrEMBL
KEGG Report mmu:100040867 UniProtKB/TrEMBL
  mmu:100040894 UniProtKB/TrEMBL
  mmu:666096 UniProtKB/TrEMBL
  mmu:666161 UniProtKB/TrEMBL
MGD MGI:3705865 ENTREZGENE
NCBI Gene 666096 ENTREZGENE
PANTHER EG546282 PROTEIN-RELATED UniProtKB/TrEMBL
  XLR/SCP3/FAM9 UniProtKB/TrEMBL
PhenoGen Gm14594 PhenoGen
UniProt A6X8J1 ENTREZGENE, UniProtKB/TrEMBL