RPL36AP45 (ribosomal protein L36a pseudogene 45) - Rat Genome Database

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Gene: RPL36AP45 (ribosomal protein L36a pseudogene 45) Homo sapiens
Analyze
Symbol: RPL36AP45
Name: ribosomal protein L36a pseudogene 45
RGD ID: 2305886
HGNC Page HGNC:36032
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL36A_20_1453
Related Functional Gene: RPL36A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381575,186,609 - 75,186,974 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1575,186,651 - 75,186,968 (-)EnsemblGRCh38hg38GRCh38
GRCh371575,478,950 - 75,479,315 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,266,045 - 73,275,492 (-)NCBINCBI36Build 36hg18NCBI36
Celera1552,429,783 - 52,430,100 (-)NCBICelera
Cytogenetic Map15q24.2NCBI
CHM1_11575,597,049 - 75,597,366 (-)NCBICHM1_1
T2T-CHM13v2.01573,056,649 - 73,057,014 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937   PMID:23648065  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:38
Interacting mature miRNAs:40
Transcripts:ENST00000497944
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3
Low 246 596 570 46 479 36 748 127 516 48 706 642 15 146 544
Below cutoff 1266 1535 699 260 811 172 2217 1174 2066 180 467 621 89 673 1439 3

Sequence


RefSeq Acc Id: ENST00000497944
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,186,651 - 75,186,968 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL36AP45 COSMIC
Ensembl Genes ENSG00000240366 Ensembl, ENTREZGENE
GTEx ENSG00000240366 GTEx
HGNC ID HGNC:36032 ENTREZGENE
Human Proteome Map RPL36AP45 Human Proteome Map
NCBI Gene 441727 ENTREZGENE