RPL7P29 (ribosomal protein L7 pseudogene 29) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RPL7P29 (ribosomal protein L7 pseudogene 29) Homo sapiens
Analyze
Symbol: RPL7P29
Name: ribosomal protein L7 pseudogene 29
RGD ID: 2305656
HGNC Page HGNC:35700
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL7_13_721
Related Functional Gene: RPL7  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38686,970,434 - 86,971,258 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl686,970,466 - 86,971,193 (+)EnsemblGRCh38hg38GRCh38
GRCh37687,680,152 - 87,680,976 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36687,736,858 - 87,737,629 (+)NCBINCBI36Build 36hg18NCBI36
Celera688,098,924 - 88,099,748 (+)NCBICelera
Cytogenetic Map6q14.3NCBI
HuRef684,896,754 - 84,897,578 (+)NCBIHuRef
CHM1_1687,777,555 - 87,778,379 (+)NCBICHM1_1
T2T-CHM13v2.0688,179,151 - 88,179,975 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:43
Interacting mature miRNAs:43
Transcripts:ENST00000437151
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 82 23 6 2 67 251 3 137 30 1
Below cutoff 571 155 405 23 41 16 393 379 1041 32 516 373 9 111 238

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000437151
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl686,970,466 - 86,971,193 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL7P29 COSMIC
Ensembl Genes ENSG00000214457 Ensembl, ENTREZGENE
GTEx ENSG00000214457 GTEx
HGNC ID HGNC:35700 ENTREZGENE
Human Proteome Map RPL7P29 Human Proteome Map
NCBI Gene 643971 ENTREZGENE