RPS4XP18 (ribosomal protein S4X pseudogene 18) - Rat Genome Database

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Gene: RPS4XP18 (ribosomal protein S4X pseudogene 18) Homo sapiens
Analyze
Symbol: RPS4XP18
Name: ribosomal protein S4X pseudogene 18
RGD ID: 2305581
HGNC Page HGNC:36170
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS4P18; RPS4X_10_1587
Related Functional Gene: RPS4X  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381822,586,409 - 22,587,278 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1822,586,465 - 22,587,227 (+)EnsemblGRCh38hg38GRCh38
GRCh371820,166,372 - 20,167,241 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361818,420,354 - 18,421,188 (+)NCBINCBI36Build 36hg18NCBI36
Celera1816,980,501 - 16,981,375 (+)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1817,020,832 - 17,021,706 (+)NCBIHuRef
CHM1_11820,093,759 - 20,094,633 (+)NCBICHM1_1
T2T-CHM13v2.01822,779,245 - 22,780,114 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:55
Interacting mature miRNAs:55
Transcripts:ENST00000495480
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 2 4 10 10 20 10 1 2 5 8 2
Below cutoff 197 484 430 248 171 225 435 167 167 46 309 214 26 144 255 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000495480
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1822,586,465 - 22,587,227 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS4XP18 COSMIC
Ensembl Genes ENSG00000239490 Ensembl, ENTREZGENE
GTEx ENSG00000239490 GTEx
HGNC ID HGNC:36170 ENTREZGENE
Human Proteome Map RPS4XP18 Human Proteome Map
NCBI Gene 646583 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 RPS4XP18  ribosomal protein S4X pseudogene 18  RPS4P18  ribosomal protein S4X pseudogene 18  Symbol and/or name change 5135510 APPROVED