RPL30P7 (ribosomal protein L30 pseudogene 7) - Rat Genome Database

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Gene: RPL30P7 (ribosomal protein L30 pseudogene 7) Homo sapiens
Analyze
Symbol: RPL30P7
Name: ribosomal protein L30 pseudogene 7
RGD ID: 2305255
HGNC Page HGNC:36402
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL30_3_541
Related Functional Gene: RPL30  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38510,488,752 - 10,489,177 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl510,488,820 - 10,489,142 (+)EnsemblGRCh38hg38GRCh38
GRCh37510,488,864 - 10,489,289 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera510,526,957 - 10,527,395 (+)NCBICelera
Cytogenetic Map5p15.2NCBI
HuRef510,472,992 - 10,473,430 (+)NCBIHuRef
CHM1_1510,488,730 - 10,489,168 (+)NCBICHM1_1
T2T-CHM13v2.0510,427,918 - 10,428,340 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:42
Interacting mature miRNAs:42
Transcripts:ENST00000479312
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 3 3 1 8 4
Low 18 454 55 11 636 10 22 12 198 97 166 170 4 1 13 11 2 2
Below cutoff 325 475 361 74 308 61 570 283 1114 113 392 409 17 256 340 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000479312
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl510,488,820 - 10,489,142 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL30P7 COSMIC
Ensembl Genes ENSG00000244361 Ensembl
GTEx ENSG00000244361 GTEx
HGNC ID HGNC:36402 ENTREZGENE
Human Proteome Map RPL30P7 Human Proteome Map
NCBI Gene 100270979 ENTREZGENE