RPS4XP21 (ribosomal protein S4X pseudogene 21) - Rat Genome Database

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Gene: RPS4XP21 (ribosomal protein S4X pseudogene 21) Homo sapiens
Analyze
Symbol: RPS4XP21
Name: ribosomal protein S4X pseudogene 21
RGD ID: 2305234
HGNC Page HGNC:36228
Description: Predicted to be located in nucleolus. Predicted to be part of cytosolic small ribosomal subunit; INTERACTS WITH bisphenol A; 4,4'-sulfonyldiphenol (ortholog); N-nitrosodiethylamine (ortholog).
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS4P21; RPS4X_10_1649
RGD Orthologs
Mouse
Alliance Genes
More Info more info ...
Related Functional Gene: RPS4X  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381934,092,476 - 34,093,361 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1934,092,561 - 34,093,310 (-)EnsemblGRCh38hg38GRCh38
GRCh371934,583,381 - 34,584,266 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361939,275,219 - 39,276,088 (-)NCBINCBI36Build 36hg18NCBI36
Celera1931,277,021 - 31,277,911 (-)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1931,082,034 - 31,082,924 (-)NCBIHuRef
CHM1_11934,584,381 - 34,585,271 (-)NCBICHM1_1
T2T-CHM13v2.01936,613,125 - 36,614,010 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19123937   PMID:31091453  


Genomics

Comparative Map Data
RPS4XP21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381934,092,476 - 34,093,361 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1934,092,561 - 34,093,310 (-)EnsemblGRCh38hg38GRCh38
GRCh371934,583,381 - 34,584,266 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361939,275,219 - 39,276,088 (-)NCBINCBI36Build 36hg18NCBI36
Celera1931,277,021 - 31,277,911 (-)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1931,082,034 - 31,082,924 (-)NCBIHuRef
CHM1_11934,584,381 - 34,585,271 (-)NCBICHM1_1
T2T-CHM13v2.01936,613,125 - 36,614,010 (-)NCBIT2T-CHM13v2.0
Rps4l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396148,256,154 - 148,257,094 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6148,256,098 - 148,257,431 (+)EnsemblGRCm39 Ensembl
GRCm386148,354,656 - 148,355,596 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6148,354,656 - 148,355,598 (+)EnsemblGRCm38mm10GRCm38
MGSCv376148,303,178 - 148,304,118 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366148,311,854 - 148,312,768 (+)NCBIMGSCv36mm8
Celera6151,386,921 - 151,387,861 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.49NCBI

Variants

.
Variants in RPS4XP21
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:69
Interacting mature miRNAs:72
Transcripts:ENST00000469064, ENST00000603814
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 11 5 1 12 10 77 3
Below cutoff 448 460 396 90 240 49 860 348 675 45 499 261 42 247 561

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000603814
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1934,092,561 - 34,093,310 (-)Ensembl
RefSeq Acc Id: XR_016453
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361939,275,219 - 39,276,088 (-)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC RPS4XP21 COSMIC
Ensembl Genes ENSG00000186008 Ensembl, ENTREZGENE
GTEx ENSG00000186008 GTEx
HGNC ID HGNC:36228 ENTREZGENE
Human Proteome Map RPS4XP21 Human Proteome Map
NCBI Gene 126235 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 RPS4XP21  ribosomal protein S4X pseudogene 21  RPS4P21  ribosomal protein S4X pseudogene 21  Symbol and/or name change 5135510 APPROVED