RPL22P6 (ribosomal protein L22 pseudogene 6) - Rat Genome Database

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Gene: RPL22P6 (ribosomal protein L22 pseudogene 6) Homo sapiens
Analyze
Symbol: RPL22P6
Name: ribosomal protein L22 pseudogene 6
RGD ID: 2304967
HGNC Page HGNC:36473
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL22_1_94
Related Functional Gene: RPL22  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381121,141,992 - 121,142,458 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1121,142,051 - 121,142,438 (-)EnsemblGRCh38hg38GRCh38
GRCh371120,880,863 - 120,881,329 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361120,682,406 - 120,682,795 (+)NCBINCBI36Build 36hg18NCBI36
Celera1179,266,447 - 179,266,564 (-)NCBICelera
Cytogenetic Map1p11.2NCBI
HuRef1177,112,720 - 177,113,109 (+)NCBIHuRef
CHM1_11121,800,139 - 121,800,528 (-)NCBICHM1_1
T2T-CHM13v2.01121,151,358 - 121,151,824 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:110
Interacting mature miRNAs:110
Transcripts:ENST00000419150
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 1 1 4 1 1 9
Below cutoff 22 28 20 4 59 5 58 48 61 7 30 44 9 44 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000419150
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1121,142,051 - 121,142,438 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL22P6 COSMIC
Ensembl Genes ENSG00000268993 Ensembl, ENTREZGENE
GTEx ENSG00000268993 GTEx
HGNC ID HGNC:36473 ENTREZGENE
Human Proteome Map RPL22P6 Human Proteome Map
NCBI Gene 100132047 ENTREZGENE