RPL7P49 (ribosomal protein L7 pseudogene 49) - Rat Genome Database

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Gene: RPL7P49 (ribosomal protein L7 pseudogene 49) Homo sapiens
Analyze
Symbol: RPL7P49
Name: ribosomal protein L7 pseudogene 49
RGD ID: 2304944
HGNC Page HGNC:36912
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL7_20_1575
Related Functional Gene: RPL7  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381776,430,351 - 76,431,144 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1776,430,417 - 76,431,124 (-)EnsemblGRCh38hg38GRCh38
GRCh371774,426,433 - 74,427,226 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361774,426,433 - 74,427,226 (-)NCBINCBI36Build 36hg18NCBI36
Celera1771,018,807 - 71,019,600 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,854,351 - 69,855,144 (-)NCBIHuRef
CHM1_11774,491,430 - 74,492,223 (-)NCBICHM1_1
T2T-CHM13v2.01777,326,937 - 77,327,730 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:67
Interacting mature miRNAs:67
Transcripts:ENST00000471402
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 34 43 53 11 219 15 105 38 112 31 77 66 7 30 3
Below cutoff 769 831 638 172 487 92 1620 659 1272 108 610 687 87 336 968

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000471402
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1776,430,417 - 76,431,124 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL7P49 COSMIC
Ensembl Genes ENSG00000242931 Ensembl, ENTREZGENE
GTEx ENSG00000242931 GTEx
HGNC ID HGNC:36912 ENTREZGENE
Human Proteome Map RPL7P49 Human Proteome Map
NCBI Gene 100271221 ENTREZGENE