RPL30P13 (ribosomal protein L30 pseudogene 13) - Rat Genome Database

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Gene: RPL30P13 (ribosomal protein L30 pseudogene 13) Homo sapiens
Analyze
Symbol: RPL30P13
Name: ribosomal protein L30 pseudogene 13
RGD ID: 2304838
HGNC Page HGNC:36280
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL30_7_1228
Related Functional Gene: RPL30  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381240,068,240 - 40,068,658 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1240,068,243 - 40,068,590 (-)EnsemblGRCh38hg38GRCh38
GRCh371240,462,042 - 40,462,460 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361240,462,042 - 40,462,460 (-)NCBINCBI36Build 36hg18NCBI36
Celera1239,265,259 - 39,265,677 (-)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1237,488,852 - 37,489,270 (-)NCBIHuRef
CHM1_11240,427,839 - 40,428,257 (-)NCBICHM1_1
T2T-CHM13v2.01240,018,137 - 40,018,555 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:190
Count of miRNA genes:187
Interacting mature miRNAs:190
Transcripts:ENST00000418873
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
ECD00362  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,462,957 - 40,463,867UniSTSGRCh37
Build 361238,749,224 - 38,750,134RGDNCBI36
Celera1239,266,174 - 39,267,084RGD
Cytogenetic Map12q12UniSTS
HuRef1237,489,767 - 37,490,677UniSTS
ECD01272  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,461,995 - 40,462,865UniSTSGRCh37
Build 361238,748,262 - 38,749,132RGDNCBI36
Celera1239,265,212 - 39,266,082RGD
Cytogenetic Map12q12UniSTS
HuRef1237,488,805 - 37,489,675UniSTS
REN26383  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,464,162 - 40,464,387UniSTSGRCh37
Build 361238,750,429 - 38,750,654RGDNCBI36
Celera1239,267,379 - 39,267,604RGD
Cytogenetic Map12q12UniSTS
HuRef1237,490,972 - 37,491,197UniSTS
REN26384  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,463,923 - 40,464,180UniSTSGRCh37
Build 361238,750,190 - 38,750,447RGDNCBI36
Celera1239,267,140 - 39,267,397RGD
Cytogenetic Map12q12UniSTS
HuRef1237,490,733 - 37,490,990UniSTS
REN26385  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,463,701 - 40,463,935UniSTSGRCh37
Build 361238,749,968 - 38,750,202RGDNCBI36
Celera1239,266,918 - 39,267,152RGD
Cytogenetic Map12q12UniSTS
HuRef1237,490,511 - 37,490,745UniSTS
REN26386  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,463,450 - 40,463,675UniSTSGRCh37
Build 361238,749,717 - 38,749,942RGDNCBI36
Celera1239,266,667 - 39,266,892RGD
Cytogenetic Map12q12UniSTS
HuRef1237,490,260 - 37,490,485UniSTS
REN26387  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,463,212 - 40,463,438UniSTSGRCh37
Build 361238,749,479 - 38,749,705RGDNCBI36
Celera1239,266,429 - 39,266,655RGD
Cytogenetic Map12q12UniSTS
HuRef1237,490,022 - 37,490,248UniSTS
REN26388  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,462,958 - 40,463,207UniSTSGRCh37
Build 361238,749,225 - 38,749,474RGDNCBI36
Celera1239,266,175 - 39,266,424RGD
Cytogenetic Map12q12UniSTS
HuRef1237,489,768 - 37,490,017UniSTS
REN26389  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,462,734 - 40,462,979UniSTSGRCh37
Build 361238,749,001 - 38,749,246RGDNCBI36
Celera1239,265,951 - 39,266,196RGD
Cytogenetic Map12q12UniSTS
HuRef1237,489,544 - 37,489,789UniSTS
REN26390  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,462,499 - 40,462,731UniSTSGRCh37
Build 361238,748,766 - 38,748,998RGDNCBI36
Celera1239,265,716 - 39,265,948RGD
Cytogenetic Map12q12UniSTS
HuRef1237,489,309 - 37,489,541UniSTS
REN26391  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,462,243 - 40,462,492UniSTSGRCh37
Build 361238,748,510 - 38,748,759RGDNCBI36
Celera1239,265,460 - 39,265,709RGD
Cytogenetic Map12q12UniSTS
HuRef1237,489,053 - 37,489,302UniSTS
REN26392  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,462,035 - 40,462,260UniSTSGRCh37
Build 361238,748,302 - 38,748,527RGDNCBI36
Celera1239,265,252 - 39,265,477RGD
Cytogenetic Map12q12UniSTS
HuRef1237,488,845 - 37,489,070UniSTS
REN26393  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,461,786 - 40,462,011UniSTSGRCh37
Build 361238,748,053 - 38,748,278RGDNCBI36
Celera1239,265,003 - 39,265,228RGD
Cytogenetic Map12q12UniSTS
HuRef1237,488,596 - 37,488,821UniSTS
REN26394  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,461,551 - 40,461,781UniSTSGRCh37
Build 361238,747,818 - 38,748,048RGDNCBI36
Celera1239,264,768 - 39,264,998RGD
Cytogenetic Map12q12UniSTS
HuRef1237,488,361 - 37,488,591UniSTS
stSG619760  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,461,683 - 40,462,831UniSTSGRCh37
Build 361238,747,950 - 38,749,098RGDNCBI36
Celera1239,264,900 - 39,266,048RGD
Cytogenetic Map12q12UniSTS
HuRef1237,488,493 - 37,489,641UniSTS
stSG619761  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,462,809 - 40,464,026UniSTSGRCh37
Build 361238,749,076 - 38,750,293RGDNCBI36
Celera1239,266,026 - 39,267,243RGD
Cytogenetic Map12q12UniSTS
HuRef1237,489,619 - 37,490,836UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 6 4 4 23 9 8 8 2 12 3 5
Below cutoff 115 85 67 10 91 8 186 95 255 20 123 53 5 43 77 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000418873
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1240,068,243 - 40,068,590 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL30P13 COSMIC
Ensembl Genes ENSG00000229014 Ensembl, ENTREZGENE
GTEx ENSG00000229014 GTEx
HGNC ID HGNC:36280 ENTREZGENE
Human Proteome Map RPL30P13 Human Proteome Map
NCBI Gene 100271305 ENTREZGENE