RPS24P18 (ribosomal protein S24 pseudogene 18) - Rat Genome Database

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Gene: RPS24P18 (ribosomal protein S24 pseudogene 18) Homo sapiens
Analyze
Symbol: RPS24P18
Name: ribosomal protein S24 pseudogene 18
RGD ID: 2304781
HGNC Page HGNC:36745
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS24_8_1590
Related Functional Gene: RPS24  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381826,098,794 - 26,099,335 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1826,098,839 - 26,099,226 (+)EnsemblGRCh38hg38GRCh38
GRCh371823,678,758 - 23,679,299 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361823,678,803 - 23,679,187 (+)NCBINCBI36Build 36hg18NCBI36
Celera1820,493,303 - 20,493,687 (+)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1820,536,239 - 20,536,623 (+)NCBIHuRef
CHM1_11823,606,096 - 23,606,480 (+)NCBICHM1_1
T2T-CHM13v2.01826,293,455 - 26,293,996 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENST00000468051
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
REN37081  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371543,799,067 - 43,799,330UniSTSGRCh37
GRCh371823,676,946 - 23,677,216UniSTSGRCh37
Build 361541,586,359 - 41,586,622RGDNCBI36
Celera1520,569,739 - 20,570,002RGD
Celera1820,491,446 - 20,491,716UniSTS
Cytogenetic Map15q15-q21UniSTS
Cytogenetic Map18q11.2UniSTS
HuRef1520,647,004 - 20,647,267UniSTS
HuRef1820,534,382 - 20,534,652UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 8 2 1 2 19 2 2
Below cutoff 57 54 40 7 46 4 125 57 87 10 157 43 4 31 80 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000468051
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1826,098,839 - 26,099,226 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS24P18 COSMIC
Ensembl Genes ENSG00000243925 Ensembl
GTEx ENSG00000243925 GTEx
HGNC ID HGNC:36745 ENTREZGENE
Human Proteome Map RPS24P18 Human Proteome Map
NCBI Gene 100271371 ENTREZGENE