RPS4XP14 (ribosomal protein S4X pseudogene 14) - Rat Genome Database

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Gene: RPS4XP14 (ribosomal protein S4X pseudogene 14) Homo sapiens
Analyze
Symbol: RPS4XP14
Name: ribosomal protein S4X pseudogene 14
RGD ID: 2304738
HGNC Page HGNC:36737
Description: INTERACTS WITH methylparaben
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS4P14; RPS4X_5_1190
Related Functional Gene: RPS4X  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38121,757,160 - 1,758,032 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl121,757,231 - 1,758,011 (-)EnsemblGRCh38hg38GRCh38
GRCh37121,866,326 - 1,867,198 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36121,736,658 - 1,737,438 (-)NCBINCBI36Build 36hg18NCBI36
Celera123,474,200 - 3,475,066 (-)NCBICelera
Cytogenetic Map12p13.33NCBI
HuRef121,721,197 - 1,722,063 (-)NCBIHuRef
CHM1_1121,865,314 - 1,866,180 (-)NCBICHM1_1
T2T-CHM13v2.0121,753,467 - 1,754,339 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:101
Interacting mature miRNAs:102
Transcripts:ENST00000493072
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-84708  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37121,868,302 - 1,868,592UniSTSGRCh37
Build 36121,738,563 - 1,738,853RGDNCBI36
Celera123,476,171 - 3,476,461RGD
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map12p13.31UniSTS
HuRef121,723,168 - 1,723,458UniSTS
TNG Radiation Hybrid Map12727.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium
Low 344 469 430 69 336 45 1501 158 556 27 459 614 26 1 560 918 3 2
Below cutoff 1834 2168 1144 448 1082 316 2493 1727 2574 249 787 800 135 628 1710

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000493072
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl121,757,231 - 1,758,011 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS4XP14 COSMIC
Ensembl Genes ENSG00000243663 Ensembl, ENTREZGENE
GTEx ENSG00000243663 GTEx
HGNC ID HGNC:36737 ENTREZGENE
Human Proteome Map RPS4XP14 Human Proteome Map
NCBI Gene 729097 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 RPS4XP14  ribosomal protein S4X pseudogene 14  RPS4P14  ribosomal protein S4X pseudogene 14  Symbol and/or name change 5135510 APPROVED