RPL39P29 (ribosomal protein L39 pseudogene 29) - Rat Genome Database

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Gene: RPL39P29 (ribosomal protein L39 pseudogene 29) Homo sapiens
Analyze
Symbol: RPL39P29
Name: ribosomal protein L39 pseudogene 29
RGD ID: 2304581
HGNC Page HGNC:35808
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL39_15_1333
Related Functional Gene: RPL39  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813102,262,838 - 102,263,253 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13102,263,046 - 102,263,202 (-)EnsemblGRCh38hg38GRCh38
GRCh3713102,915,188 - 102,915,603 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613102,915,195 - 102,915,603 (-)NCBINCBI36Build 36hg18NCBI36
Celera1383,757,652 - 83,758,060 (-)NCBICelera
Cytogenetic Map13q33.1NCBI
HuRef1383,507,546 - 83,507,954 (-)NCBIHuRef
CHM1_113102,884,746 - 102,885,154 (-)NCBICHM1_1
T2T-CHM13v2.013101,478,854 - 101,479,269 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:46
Interacting mature miRNAs:49
Transcripts:ENST00000447779
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 7 11 14 13 22 13 9 11 199 5 29 16 3 8
Below cutoff 66 62 37 18 32 16 103 55 409 12 81 54 2 37 61

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000447779
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13102,263,046 - 102,263,202 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL39P29 COSMIC
Ensembl Genes ENSG00000236860 Ensembl
GTEx ENSG00000236860 GTEx
HGNC ID HGNC:35808 ENTREZGENE
Human Proteome Map RPL39P29 Human Proteome Map
NCBI Gene 100271522 ENTREZGENE