RPL36AP35 (ribosomal protein L36a pseudogene 35) - Rat Genome Database

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Gene: RPL36AP35 (ribosomal protein L36a pseudogene 35) Homo sapiens
Analyze
Symbol: RPL36AP35
Name: ribosomal protein L36a pseudogene 35
RGD ID: 2304465
HGNC Page HGNC:35639
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL36A_16_1006
Related Functional Gene: RPL36A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389108,821,697 - 108,822,018 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9108,821,697 - 108,822,004 (+)EnsemblGRCh38hg38GRCh38
GRCh379111,583,977 - 111,584,298 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369111,583,977 - 111,584,298 (+)NCBINCBI36Build 36hg18NCBI36
Celera982,083,294 - 82,083,615 (+)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef981,183,751 - 81,184,072 (+)NCBIHuRef
CHM1_19111,730,618 - 111,730,939 (+)NCBICHM1_1
T2T-CHM13v2.09120,990,830 - 120,991,151 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:47
Interacting mature miRNAs:47
Transcripts:ENST00000426082
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 3 5 9 11 2 12 3 7 3 7
Below cutoff 60 46 125 20 46 10 150 28 224 6 49 42 10 24 108

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000426082
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9108,821,697 - 108,822,004 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL36AP35 COSMIC
Ensembl Genes ENSG00000231810 Ensembl, ENTREZGENE
GTEx ENSG00000231810 GTEx
HGNC ID HGNC:35639 ENTREZGENE
Human Proteome Map RPL36AP35 Human Proteome Map
NCBI Gene 100271610 ENTREZGENE