RPL7P24 (ribosomal protein L7 pseudogene 24) - Rat Genome Database

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Gene: RPL7P24 (ribosomal protein L7 pseudogene 24) Homo sapiens
Analyze
Symbol: RPL7P24
Name: ribosomal protein L7 pseudogene 24
RGD ID: 2304385
HGNC Page HGNC:36715
Description: INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL7_8_586
Related Functional Gene: RPL7  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38580,500,312 - 80,501,468 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl580,500,332 - 80,501,400 (+)EnsemblGRCh38hg38GRCh38
GRCh37579,796,131 - 79,797,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36579,831,908 - 79,833,043 (+)NCBINCBI36Build 36hg18NCBI36
Celera575,697,442 - 75,698,598 (+)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef575,004,237 - 75,005,393 (+)NCBIHuRef
CHM1_1579,229,236 - 79,230,392 (+)NCBICHM1_1
T2T-CHM13v2.0580,984,312 - 80,985,467 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:74
Interacting mature miRNAs:74
Transcripts:ENST00000493052
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2 1
Low 31 52 49 11 127 8 47 33 85 22 166 72 5 1 4 12 3 2
Below cutoff 1273 1507 1113 333 911 226 2242 1079 2046 243 975 1035 118 643 1430 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000493052
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl580,500,332 - 80,501,400 (+)Ensembl
RefSeq Acc Id: XR_038947
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36579,831,908 - 79,833,043 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC RPL7P24 COSMIC
Ensembl Genes ENSG00000240003 Ensembl, ENTREZGENE
GTEx ENSG00000240003 GTEx
HGNC ID HGNC:36715 ENTREZGENE
Human Proteome Map RPL7P24 Human Proteome Map
NCBI Gene 100127893 ENTREZGENE