RPS4XP19 (ribosomal protein S4X pseudogene 19) - Rat Genome Database

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Gene: RPS4XP19 (ribosomal protein S4X pseudogene 19) Homo sapiens
Analyze
Symbol: RPS4XP19
Name: ribosomal protein S4X pseudogene 19
RGD ID: 2304359
HGNC Page HGNC:36872
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS4P19; RPS4X_9_1583
Related Functional Gene: RPS4X  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,019,998 - 9,020,826 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl189,020,029 - 9,020,764 (+)EnsemblGRCh38hg38GRCh38
GRCh37189,019,996 - 9,020,824 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,010,027 - 9,010,765 (+)NCBINCBI36Build 36hg18NCBI36
Celera188,904,125 - 8,904,953 (+)NCBICelera
Cytogenetic Map18p11.22NCBI
HuRef188,984,123 - 8,984,951 (+)NCBIHuRef
CHM1_1189,020,432 - 9,021,260 (+)NCBICHM1_1
T2T-CHM13v2.0189,183,422 - 9,184,250 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937   PMID:23251661  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:218
Count of miRNA genes:210
Interacting mature miRNAs:217
Transcripts:ENST00000460237
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 2 1
Low 2 2 25 17 2 7 1 3 12 3
Below cutoff 778 958 513 152 495 87 1527 719 1118 60 506 457 71 436 999

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000460237
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl189,020,029 - 9,020,764 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS4XP19 COSMIC
Ensembl Genes ENSG00000242058 Ensembl, ENTREZGENE
GTEx ENSG00000242058 GTEx
HGNC ID HGNC:36872 ENTREZGENE
Human Proteome Map RPS4XP19 Human Proteome Map
NCBI Gene 645573 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 RPS4XP19  ribosomal protein S4X pseudogene 19  RPS4P19  ribosomal protein S4X pseudogene 19  Symbol and/or name change 5135510 APPROVED